Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10c10
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein ... 29 2.0
AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 prote... 29 2.0
AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical ... 29 2.0
Z54237-7|CAB54312.2| 645|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z54235-9|CAB54190.2| 645|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF039049-2|AAB94252.2| 297|Caenorhabditis elegans Serpentine re... 29 3.6
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 28 4.7
AF026204-6|AAB71248.1| 242|Caenorhabditis elegans Hypothetical ... 28 6.2
U88170-9|AAB42243.2| 348|Caenorhabditis elegans Serpentine rece... 27 8.2
>U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein 756
protein.
Length = 425
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 400 ALSS*ISLGGALVPTCWSCPITKILSGTFMSNF 302
A SS +S GGA + P+T L+G + SNF
Sbjct: 5 AASSIVSYGGAATSNFLTTPVTPFLAGFYNSNF 37
>AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 protein
protein.
Length = 425
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 400 ALSS*ISLGGALVPTCWSCPITKILSGTFMSNF 302
A SS +S GGA + P+T L+G + SNF
Sbjct: 5 AASSIVSYGGAATSNFLTTPVTPFLAGFYNSNF 37
>AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical
protein F52G3.3 protein.
Length = 807
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = -1
Query: 326 FWYLHVKFLISIIPT*NH-SIGSCFIINYITCCLYSLRHSHIVTDKASICLFGWILHTVN 150
++ K +++I + +H S+ F Y S H + + SI F +IL +
Sbjct: 364 YFAFKAKSIVTICVSHHHLSLNLKFFFFYKIFFPNSKFHPLLFVFQHSILHFKFILKIIF 423
Query: 149 IYRSYTYRCEISFFNLFHLVGFTRIPLGG 63
++RS + C + FF H + +P GG
Sbjct: 424 VFRSISRNCGVQFFQKMHQ---SDLPFGG 449
>Z54237-7|CAB54312.2| 645|Caenorhabditis elegans Hypothetical
protein T11B7.4b protein.
Length = 645
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +3
Query: 465 QHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRP 584
QHY P +P+N PP N +Y TT RP
Sbjct: 399 QHYQQHVVQAPPPVPSNPPPSNGSSYTKTSFERTTTETRP 438
>Z54235-9|CAB54190.2| 645|Caenorhabditis elegans Hypothetical
protein T11B7.4b protein.
Length = 645
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +3
Query: 465 QHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRP 584
QHY P +P+N PP N +Y TT RP
Sbjct: 399 QHYQQHVVQAPPPVPSNPPPSNGSSYTKTSFERTTTETRP 438
>AF039049-2|AAB94252.2| 297|Caenorhabditis elegans Serpentine
receptor, class x protein67 protein.
Length = 297
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -1
Query: 260 CFIINYITCCLYSLRHSHIVTDKAS--ICLFGWILHTVNIYRSYTYRCEISFFNLFHLVG 87
C IN L L++ T K + I WI+ T+ Y Y C + + H +
Sbjct: 96 CISINRFCAVLVPLKYDIWFTIKNTKKIIALLWIVETIIAAIFYQYLCNVFYLEEIHFIQ 155
Query: 86 FT 81
FT
Sbjct: 156 FT 157
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 28.3 bits (60), Expect = 4.7
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Frame = +3
Query: 375 PREIQLDNAVLPT--DPGMVRVSTP-PRIITLDQHYFPSADDFPHGMPNN-SPPRNIKTY 542
P + A LPT G V+TP P ++ F P MP PP T+
Sbjct: 755 PSTPTISPAPLPTTGSSGGPDVTTPAPPVMVTGPLIFIIPTVIPSTMPTTPEPPTISSTF 814
Query: 543 RSQGDGARTTTPRPDHFNESIMTES 617
A TP P H +S T S
Sbjct: 815 TPAATQASPATPTPQHVAQSAPTNS 839
>AF026204-6|AAB71248.1| 242|Caenorhabditis elegans Hypothetical
protein C30E1.3 protein.
Length = 242
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = -1
Query: 185 ICLFG-WILHTVNIYRSYTYRCEISFF-----NLFHLVGFTR 78
+C G W + TVN RSYTY F+ N+F + +T+
Sbjct: 171 LCAVGIWSIVTVNCPRSYTYHLSKYFYPNCQNNVFRMCSYTK 212
>U88170-9|AAB42243.2| 348|Caenorhabditis elegans Serpentine
receptor, class h protein51 protein.
Length = 348
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -3
Query: 294 HNPN-LKPFHWELFHHQLYHLLPLFF 220
H+P +K F W LFH Q + LL F
Sbjct: 57 HSPKYMKEFKWHLFHLQFWFLLLTIF 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,634,898
Number of Sequences: 27780
Number of extensions: 366480
Number of successful extensions: 781
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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