Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b10
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell l...    33   0.15 
AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.     33   0.15 
U32305-6|AAV58892.1|  411|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U32305-5|AAK18855.2|  501|Caenorhabditis elegans Hypothetical pr...    29   2.5  

>L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell
           lineage protein 36 protein.
          Length = 962

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
 Frame = +1

Query: 541 MFFRFPEDSSLRQIWTDLTG-------RNNWTPTDFSY----ICIPHFSVDCFKLDN 678
           M   FP D   R+IW +L G       R+   P  FS     IC  HF+ +CF+  N
Sbjct: 178 MHLNFPADLDRRRIWANLLGFKYKDILRSKMGPVSFSIAAGPICTEHFAEECFRNHN 234


>AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.
          Length = 962

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
 Frame = +1

Query: 541 MFFRFPEDSSLRQIWTDLTG-------RNNWTPTDFSY----ICIPHFSVDCFKLDN 678
           M   FP D   R+IW +L G       R+   P  FS     IC  HF+ +CF+  N
Sbjct: 178 MHLNFPADLDRRRIWANLLGFKYKDILRSKMGPVSFSIAAGPICTEHFAEECFRNHN 234


>U32305-6|AAV58892.1|  411|Caenorhabditis elegans Hypothetical
           protein B0336.7b protein.
          Length = 411

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +1

Query: 511 CDDCKNMDS--IMFFRFPEDSSLRQIWTD---LTGRNNWTPTDFSYICIPHFSVDCF 666
           C  C+  +S  I  F++P+   L++ W     L      + T   YIC  HFS D F
Sbjct: 46  CLVCQRSESEKIRLFKWPKSEELKEQWLHFFRLPATVLQSATQEPYICCYHFSADTF 102


>U32305-5|AAK18855.2|  501|Caenorhabditis elegans Hypothetical
           protein B0336.7a protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +1

Query: 511 CDDCKNMDS--IMFFRFPEDSSLRQIWTD---LTGRNNWTPTDFSYICIPHFSVDCF 666
           C  C+  +S  I  F++P+   L++ W     L      + T   YIC  HFS D F
Sbjct: 136 CLVCQRSESEKIRLFKWPKSEELKEQWLHFFRLPATVLQSATQEPYICCYHFSADTF 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,482,831
Number of Sequences: 27780
Number of extensions: 284717
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)