Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d05
         (204 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical...    28   0.79 
AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical ...    27   2.4  
Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquino...    26   4.2  
AL033514-37|CAA22087.2|  441|Caenorhabditis elegans Hypothetical...    25   5.6  
AF038618-7|AAB92070.2|  227|Caenorhabditis elegans Syaptophysin ...    25   7.4  
U13643-3|AAA21086.3|  394|Caenorhabditis elegans Brca homolog (t...    25   9.7  
AY523518-1|AAR98640.1|  394|Caenorhabditis elegans potential BRC...    25   9.7  

>AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical
           protein B0205.11 protein.
          Length = 276

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -3

Query: 193 MSNLFFINDTNGNNNHLANK*VFYCFRNSFVIKKPINMPNYSYTPTIGRTYVYDNKYY 20
           M N + I D N   + L    VF      F+  KPI+ PN+     + R YV  N+ Y
Sbjct: 151 MENQWTI-DRNLVKSSLRQMGVFVAENTIFLAAKPISGPNFDIEAKLFRFYVVVNQQY 207


>AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical
           protein C03H5.6 protein.
          Length = 530

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 135 LFARWLLFPFVSLIKNKFDIKK 200
           +F  +LLFPF+SL  + F +KK
Sbjct: 475 IFVFFLLFPFLSLHNHNFVVKK 496


>Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical
           protein F44G4.2 protein.
          Length = 160

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -3

Query: 94  KPINMPNYSY-TPTIGRTYV 38
           KPI  P+Y Y TPT GRTY+
Sbjct: 75  KPI--PDYFYRTPTTGRTYI 92


>AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquinone
           oxidoreductaseAGGG subunit protein.
          Length = 160

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -3

Query: 94  KPINMPNYSY-TPTIGRTYV 38
           KPI  P+Y Y TPT GRTY+
Sbjct: 75  KPI--PDYFYRTPTTGRTYI 92


>AL033514-37|CAA22087.2|  441|Caenorhabditis elegans Hypothetical
           protein Y75B8A.27 protein.
          Length = 441

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 178 FINDTNGNNNHLANK*VFYCFRNSFVIKKPIN 83
           F+ D N NN +++ + V  CFR     KK I+
Sbjct: 266 FLGDNNSNNFNISQEDVKQCFRRFVDGKKMIS 297


>AF038618-7|AAB92070.2|  227|Caenorhabditis elegans Syaptophysin
           protein 1 protein.
          Length = 227

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 92  FFYYKTVTKTVKYLFICEMVII 157
           FFY+  VT  +  +FIC + +I
Sbjct: 94  FFYFVNVTALIYVIFICFVYVI 115


>U13643-3|AAA21086.3|  394|Caenorhabditis elegans Brca homolog
           (tumor suppressorgene brca1) protein 2 protein.
          Length = 394

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -3

Query: 190 SNLFFINDTNGNNNHLANK*VFYCFRNSFVIKKPINMPNYSYTPTI 53
           S   FIN T  N   L +   +  F N F  K P    NY + P +
Sbjct: 306 SGQMFINVTTKNMKKLLDLLGYEGFDNWFRFKDPQERQNYVFRPVM 351


>AY523518-1|AAR98640.1|  394|Caenorhabditis elegans potential
           BRCA2-like protein (44.7kD) (3H990) protein.
          Length = 394

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -3

Query: 190 SNLFFINDTNGNNNHLANK*VFYCFRNSFVIKKPINMPNYSYTPTI 53
           S   FIN T  N   L +   +  F N F  K P    NY + P +
Sbjct: 306 SGQMFINVTTKNMKKLLDLLGYEGFDNWFRFKDPQERQNYVFRPVM 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,235,411
Number of Sequences: 27780
Number of extensions: 93025
Number of successful extensions: 301
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 47
effective length of database: 11,434,538
effective search space used: 228690760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)