SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c02
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U68266-1|AAB16981.1|  219|Caenorhabditis elegans RAB-3 protein.        32   0.47 
U68265-1|AAB16980.1|  219|Caenorhabditis elegans RAB-3 protein.        32   0.47 
U28944-15|AAK68196.1|  219|Caenorhabditis elegans Rab family pro...    32   0.47 
U28944-14|AAK68195.1|  233|Caenorhabditis elegans Rab family pro...    32   0.47 
AB112928-1|BAD07033.1|  219|Caenorhabditis elegans Rab3 protein.       32   0.47 
U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z81093-2|CAB03146.1|  545|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U97000-8|AAC47999.1|  347|Caenorhabditis elegans Seven tm recept...    29   4.4  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    29   4.4  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    29   4.4  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    29   4.4  
Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF016417-3|AAB65281.1|  457|Caenorhabditis elegans Hypothetical ...    28   7.7  

>U68266-1|AAB16981.1|  219|Caenorhabditis elegans RAB-3 protein.
          Length = 219

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSIE 206
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U68265-1|AAB16980.1|  219|Caenorhabditis elegans RAB-3 protein.
          Length = 219

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSIE 206
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U28944-15|AAK68196.1|  219|Caenorhabditis elegans Rab family
           protein 3, isoform b protein.
          Length = 219

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSIE 206
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U28944-14|AAK68195.1|  233|Caenorhabditis elegans Rab family
           protein 3, isoform a protein.
          Length = 233

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSIE 206
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 158 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 206


>AB112928-1|BAD07033.1|  219|Caenorhabditis elegans Rab3 protein.
          Length = 219

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSIE 206
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical
           protein C56C10.1 protein.
          Length = 617

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
 Frame = +3

Query: 198 SIEIYGIHDNRLNN---KKIRNYYLKKICILLNLNFKHVIESSFDKNHIVAKLCDATRAK 368
           S+++ G+ D+  N      ++ Y  + +  L NL    VI   + + HI      + RA+
Sbjct: 421 SLKLDGVPDDTYNEFVEMYLQKYGYEHMFELQNLRNSRVI---YARRHIAHDRTISERAR 477

Query: 369 EWQTMSRERRLKNFNLNINYDGPVKI-FVAATAEQKLLLKKTRDAL 503
            W+T++R+ R+   N  ++   P  + +V       LL K   D +
Sbjct: 478 TWETLARKFRIVKGNEPMDMSNPSDMSYVFGARISPLLCKIVEDTI 523


>Z81093-2|CAB03146.1|  545|Caenorhabditis elegans Hypothetical
           protein F58D2.1 protein.
          Length = 545

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
 Frame = +3

Query: 465 EQKLLLKKTRDA--LLPFYKYISICKNGVMVRRDEKSRVFIVKNEQN--IEYLKANKYYA 632
           E K L +KTR    L+   K+ +  KN +MV    +  + I++      +E  +A    +
Sbjct: 416 ELKSLFEKTRHVKRLIQLIKWSAPRKNELMVSASIEIIIKIIEKSSKACMEITEAG-IIS 474

Query: 633 FHSDSVDNFEFENDSKKCFKI*FNLS 710
           F S  V+NFE    + KC ++  NLS
Sbjct: 475 FVSSCVENFESNAINDKCLELLRNLS 500


>Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical
           protein F23B2.12 protein.
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
 Frame = +3

Query: 30  PYTHRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSIEI 209
           P TH  D    +    ++      SL   ++    +D  ++M     RL   N++D  ++
Sbjct: 197 PLTHEYDFWRFNHRVAIVLAETGGSLCYRKVANGFADIREAMKTPEGRL---NISDLFQL 253

Query: 210 YG-IHDNRLNNKKIRNYYLKKICILLNLNFKHVIESSFDKNHIVAKLCDATRAKEWQTM 383
              +++  LN   I+ +YL  I       F+ ++E + D +  +A LC       W  M
Sbjct: 254 NPRLNETALNYNDIQMFYLAIIA-----PFQEIVEFNDDFDLSIADLCTTIDKSNWTNM 307


>Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical
           protein F23B2.12 protein.
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
 Frame = +3

Query: 30  PYTHRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSIEI 209
           P TH  D    +    ++      SL   ++    +D  ++M     RL   N++D  ++
Sbjct: 197 PLTHEYDFWRFNHRVAIVLAETGGSLCYRKVANGFADIREAMKTPEGRL---NISDLFQL 253

Query: 210 YG-IHDNRLNNKKIRNYYLKKICILLNLNFKHVIESSFDKNHIVAKLCDATRAKEWQTM 383
              +++  LN   I+ +YL  I       F+ ++E + D +  +A LC       W  M
Sbjct: 254 NPRLNETALNYNDIQMFYLAIIA-----PFQEIVEFNDDFDLSIADLCTTIDKSNWTNM 307


>U97000-8|AAC47999.1|  347|Caenorhabditis elegans Seven tm receptor
           protein 136 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = +3

Query: 510 FYKYISICKNGVMVRRDEKSRVFIVKNEQNIEYLKANKYYAFHSDSVDNFEFENDSKKCF 689
           FY+Y+++CK  ++V    K ++F++     I ++    +  F+    +  E +   KK F
Sbjct: 115 FYRYVALCKTHLLVYLQGK-KLFLIFTPSVIVFI--IWFIMFYFGMPNILEKQEYLKKEF 171

Query: 690 KI*FNLSDN 716
           KI FN+  +
Sbjct: 172 KICFNVDSS 180


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
            protein 19,isoform a protein.
          Length = 1783

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +3

Query: 105  LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSIEIYGIHDNRLNNKKIRNYYLK--KICI 278
            L ++   E   D + S S++ + + CD ++D     G++++R  N     Y++    +C 
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353

Query: 279  LLNLN-FKHVIESSFD 323
             L +N F  VI  +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
            protein 19,isoform b protein.
          Length = 1877

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +3

Query: 105  LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSIEIYGIHDNRLNNKKIRNYYLK--KICI 278
            L ++   E   D + S S++ + + CD ++D     G++++R  N     Y++    +C 
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353

Query: 279  LLNLN-FKHVIESSFD 323
             L +N F  VI  +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
            calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +3

Query: 105  LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSIEIYGIHDNRLNNKKIRNYYLK--KICI 278
            L ++   E   D + S S++ + + CD ++D     G++++R  N     Y++    +C 
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353

Query: 279  LLNLN-FKHVIESSFD 323
             L +N F  VI  +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369


>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 306 IESSFDKNHIVAKLCDATRAKEWQTMS 386
           +ES++DK H + + C  T + +W T +
Sbjct: 131 VESAWDKTHQLFECCGVTNSSDWLTFT 157


>AF016417-3|AAB65281.1|  457|Caenorhabditis elegans Hypothetical
           protein F17A9.4 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 180 CDNLTDSIEIYGIHDNRLNNKKIRNYYLK 266
           CDNLT S +I G   N  N K  +N +LK
Sbjct: 7   CDNLTVSSKILGEQLNFRNGKTAQNRFLK 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,306,394
Number of Sequences: 27780
Number of extensions: 256263
Number of successful extensions: 918
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -