Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10b20
(505 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 169 1e-42
U39645-5|AAU05591.1| 345|Caenorhabditis elegans Hypothetical pr... 31 0.36
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr... 30 1.1
U39645-4|AAU05592.1| 341|Caenorhabditis elegans Hypothetical pr... 30 1.1
AL132848-1|CAB60388.2| 381|Caenorhabditis elegans Hypothetical ... 29 1.9
U56864-1|AAB04059.1| 355|Caenorhabditis elegans EGL-30 protein. 28 4.4
AY008139-1|AAG32092.1| 355|Caenorhabditis elegans heterotrimeri... 28 4.4
AF003739-2|AAM15593.1| 303|Caenorhabditis elegans Egg laying de... 28 4.4
AF003739-1|AAB58071.1| 355|Caenorhabditis elegans Egg laying de... 28 4.4
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 169 bits (411), Expect = 1e-42
Identities = 75/124 (60%), Positives = 103/124 (83%)
Frame = +1
Query: 100 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 279
+VKK+ +F RH+SDRY ++ +WRKP+GIDNRVRRRF+G MP IG+GS+++TR +LP
Sbjct: 11 VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70
Query: 280 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 459
NG++KVLV NVK+L++L+MQ+ KY EI HGVS+K RK IVERA QL+I++TN ARLR+
Sbjct: 71 NGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTNGNARLRT 130
Query: 460 QENE 471
+E+E
Sbjct: 131 EESE 134
>U39645-5|AAU05591.1| 345|Caenorhabditis elegans Hypothetical
protein C14F11.4a protein.
Length = 345
Score = 31.5 bits (68), Expect = 0.36
Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Frame = +1
Query: 88 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 261
Y P + KK +RFI ++R+D + RN P R + + Q L+ + Y S+ +
Sbjct: 4 YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60
Query: 262 TRHMLPNGFRKV--LVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 435
+ L +K+ ++ ++ ++A +++ K I +R +L +T
Sbjct: 61 AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120
Query: 436 NAAARLRSQENE 471
+ +NE
Sbjct: 121 GKTQFVAPLQNE 132
>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical protein
K07G5.3 protein.
Length = 1202
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = -2
Query: 213 EPPADSVVN-TSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVCFFKKRD-- 43
E P +S+ T R++ +P +++ +R+ ++ ++ FD+ R HLV + R+
Sbjct: 1058 EEPLESIQTATVRYSKLPEDWIVELRISLEREIKIRFDESRKHAIPQWHLVAARQLREIL 1117
Query: 42 SEPRGDT 22
PRG T
Sbjct: 1118 ENPRGIT 1124
>U39645-4|AAU05592.1| 341|Caenorhabditis elegans Hypothetical
protein C14F11.4b protein.
Length = 341
Score = 29.9 bits (64), Expect = 1.1
Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Frame = +1
Query: 88 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 261
Y P + KK +RFI ++R+D + RN P R + + Q L+ + Y S+ +
Sbjct: 4 YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60
Query: 262 TRHMLPNGFRKV--LVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 435
+ L +K+ ++ ++ ++A +++ K I +R +L +T
Sbjct: 61 AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120
Query: 436 NAA 444
A
Sbjct: 121 FVA 123
>AL132848-1|CAB60388.2| 381|Caenorhabditis elegans Hypothetical
protein Y47H10A.2 protein.
Length = 381
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 220 QYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQN 342
QYLM NI R P+GF K L+ + L+I QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253
>U56864-1|AAB04059.1| 355|Caenorhabditis elegans EGL-30 protein.
Length = 355
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 78 YSHLVCFFKKRDSEPRGDTAARE 10
YSHL +F + D PR AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303
>AY008139-1|AAG32092.1| 355|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 355
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 78 YSHLVCFFKKRDSEPRGDTAARE 10
YSHL +F + D PR AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303
>AF003739-2|AAM15593.1| 303|Caenorhabditis elegans Egg laying
defective protein 30,isoform b protein.
Length = 303
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 78 YSHLVCFFKKRDSEPRGDTAARE 10
YSHL +F + D PR AARE
Sbjct: 229 YSHLADYFPEYDGPPRDPIAARE 251
>AF003739-1|AAB58071.1| 355|Caenorhabditis elegans Egg laying
defective protein 30,isoform a protein.
Length = 355
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 78 YSHLVCFFKKRDSEPRGDTAARE 10
YSHL +F + D PR AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,802,945
Number of Sequences: 27780
Number of extensions: 218703
Number of successful extensions: 698
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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