Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10c20
(313 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82256-2|CAB05115.1| 62|Caenorhabditis elegans Hypothetical pr... 75 8e-15
AL032657-13|CAB76744.1| 87|Caenorhabditis elegans Hypothetical... 57 3e-09
AL032625-6|CAN86641.1| 167|Caenorhabditis elegans Hypothetical ... 44 2e-05
Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical pr... 27 2.8
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 2.8
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ... 27 2.8
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ... 27 2.8
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 2.8
U23183-3|AAA64340.3| 496|Caenorhabditis elegans Hypothetical pr... 26 6.4
AC006712-8|AAU20838.1| 450|Caenorhabditis elegans Hypothetical ... 26 6.4
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 25 8.4
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p... 25 8.4
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p... 25 8.4
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 25 8.4
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p... 25 8.4
Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr... 25 8.4
AY389810-1|AAR28682.1| 781|Caenorhabditis elegans zinc finger t... 25 8.4
AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger t... 25 8.4
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical... 25 8.4
>Z82256-2|CAB05115.1| 62|Caenorhabditis elegans Hypothetical
protein B0513.3 protein.
Length = 62
Score = 75.4 bits (177), Expect = 8e-15
Identities = 33/50 (66%), Positives = 39/50 (78%)
Frame = +3
Query: 48 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 197
MAKSKNHTNHNQN+KAHRNGI KP+K S G+D KF++N RF +K N
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGITKPKKHIFLSMKGVDAKFIKNLRFSRKNN 50
>AL032657-13|CAB76744.1| 87|Caenorhabditis elegans Hypothetical
protein Y47H9C.14 protein.
Length = 87
Score = 56.8 bits (131), Expect = 3e-09
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = +3
Query: 54 KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 197
K +NHTNHN+N KAHRNGI KP+K S G +F+++ RF +K N
Sbjct: 14 KPENHTNHNRNNKAHRNGITKPKKHIFLSIEGSRRQFIKSLRFFRKNN 61
>AL032625-6|CAN86641.1| 167|Caenorhabditis elegans Hypothetical
protein Y37H9A.5 protein.
Length = 167
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +3
Query: 54 KSKNHTNHNQNRKAHRNGIKKPR 122
KSKNHTNHNQN AHR GI KP+
Sbjct: 80 KSKNHTNHNQNNTAHRIGITKPK 102
>Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical
protein ZC504.3 protein.
Length = 668
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 87 RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCK 188
+K HR+ +KK R+ RH + P + R C+
Sbjct: 266 QKLHRDAMKKRREQRHREAVSKLPVYYPGLRGCQ 299
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 108 YHFCELCGFGYDLYDSL 58
Y+FC++CGFG DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701
>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
protein Y47D3B.5b protein.
Length = 1136
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 4 SVLSSDSKWIEN--SSKWQSQRIIQIITKTAKLTE 102
++LS KW+ + S KWQ RI IT+ AK+T+
Sbjct: 272 AILSKCGKWMTDSLSEKWQQHRI--QITEKAKMTK 304
>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
protein Y47D3B.5a protein.
Length = 1088
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 4 SVLSSDSKWIEN--SSKWQSQRIIQIITKTAKLTE 102
++LS KW+ + S KWQ RI IT+ AK+T+
Sbjct: 272 AILSKCGKWMTDSLSEKWQQHRI--QITEKAKMTK 304
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 108 YHFCELCGFGYDLYDSL 58
Y+FC++CGFG DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701
>U23183-3|AAA64340.3| 496|Caenorhabditis elegans Hypothetical
protein K01A12.3 protein.
Length = 496
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +3
Query: 66 HTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRN 173
H HN +++++ G+K R + D F+RN
Sbjct: 373 HGRHNVSKRSNAAGMKSTRISARSGRTNRDGNFVRN 408
>AC006712-8|AAU20838.1| 450|Caenorhabditis elegans Hypothetical
protein Y119C1B.3 protein.
Length = 450
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 54 KSKNHTNHNQNRKAHRNGIKKPRKTRHES--TLGMDPKFLRNQR 179
KSK N + NG + P+KTR S T PK R+ R
Sbjct: 377 KSKKAAAANHKNASRNNGNETPKKTRRSSSTTPTRTPKQRRSSR 420
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 10 LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 120
+ S+ +++EN+ ++Q++ IIQ + ++TEM+ + +
Sbjct: 657 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 694
>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
protein T05A10.1f protein.
Length = 2048
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 10 LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 120
+ S+ +++EN+ ++Q++ IIQ + ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762
>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
protein T05A10.1e protein.
Length = 2101
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 10 LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 120
+ S+ +++EN+ ++Q++ IIQ + ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762
>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
protein T05A10.1d protein.
Length = 2134
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 10 LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 120
+ S+ +++EN+ ++Q++ IIQ + ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762
>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
protein T05A10.1g protein.
Length = 1888
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 10 LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 120
+ S+ +++EN+ ++Q++ IIQ + ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762
>Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical
protein T05A10.1i protein.
Length = 1927
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 10 LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 120
+ S+ +++EN+ ++Q++ IIQ + ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762
>Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical
protein T05A10.1j protein.
Length = 1509
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 10 LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 120
+ S+ +++EN+ ++Q++ IIQ + ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762
>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical
protein T05A10.1c protein.
Length = 1692
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 10 LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 120
+ S+ +++EN+ ++Q++ IIQ + ++TEM+ + +
Sbjct: 283 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 320
>AY389810-1|AAR28682.1| 781|Caenorhabditis elegans zinc finger
transcription factorSMA-9 protein.
Length = 781
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 10 LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 120
+ S+ +++EN+ ++Q++ IIQ + ++TEM+ + +
Sbjct: 305 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 342
>AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger
transcription factorSMA-9 protein.
Length = 909
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 10 LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 120
+ S+ +++EN+ ++Q++ IIQ + ++TEM+ + +
Sbjct: 657 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 694
>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
protein Y110A7A.16 protein.
Length = 1250
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 4 SVLSSDSKWIENSSKWQSQRIIQIIT 81
+VLS + +W+EN SQ I+ +IT
Sbjct: 1146 NVLSENYRWLENIGNELSQLILVLIT 1171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,808,466
Number of Sequences: 27780
Number of extensions: 125459
Number of successful extensions: 428
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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