Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0073
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical pr...    26   6.3  
U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.        26   6.3  
L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage stimul...    26   6.3  
AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (m...    26   6.3  
AF039047-14|AAM15589.1|  978|Caenorhabditis elegans Human mlk (m...    26   6.3  
Z81122-5|CAB03357.1|  579|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical
           protein F28C6.6 protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 303 PRPV*SK-INFFPLISYVRSLISIPGFFSEHPKSCFHFMALL 181
           PRP  S+ I F P ++   S   +PG     P+S  H M+LL
Sbjct: 584 PRPDISQMIPFKPRVNCTASFHPVPGGVFPPPQSVAHLMSLL 625


>U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.
          Length = 730

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 303 PRPV*SK-INFFPLISYVRSLISIPGFFSEHPKSCFHFMALL 181
           PRP  S+ I F P ++   S   +PG     P+S  H M+LL
Sbjct: 579 PRPDISQMIPFKPRVNCTASFHPVPGGVFPPPQSVAHLMSLL 620


>L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage
           stimulation factor protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 303 PRPV*SK-INFFPLISYVRSLISIPGFFSEHPKSCFHFMALL 181
           PRP  S+ I F P ++   S   +PG     P+S  H M+LL
Sbjct: 584 PRPDISQMIPFKPRVNCTASFHPVPGGVFPPPQSVAHLMSLL 625


>AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk
           (mixed lineage kinase)homolog protein 1, isoform a
           protein.
          Length = 1040

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 277 LFPLDFVRKVTYFDTRLFLRASQVVFPL 194
           LFP ++ R+VTY D  +  +  +++ P+
Sbjct: 119 LFPSNYAREVTYKDNLVEFKQDEIMLPV 146


>AF039047-14|AAM15589.1|  978|Caenorhabditis elegans Human mlk
           (mixed lineage kinase)homolog protein 1, isoform b
           protein.
          Length = 978

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 277 LFPLDFVRKVTYFDTRLFLRASQVVFPL 194
           LFP ++ R+VTY D  +  +  +++ P+
Sbjct: 119 LFPSNYAREVTYKDNLVEFKQDEIMLPV 146


>Z81122-5|CAB03357.1|  579|Caenorhabditis elegans Hypothetical
           protein T13F2.6 protein.
          Length = 579

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 43  FQSGNHCCCHSPVRSGLCR*HVHRFVTKC 129
           F+SG+HCC    + SG  R H H+  +KC
Sbjct: 236 FRSGSHCC--ESIESGHRRPHHHQ--SKC 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,926,193
Number of Sequences: 27780
Number of extensions: 193008
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)