Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0057
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-1|CAB02090.1|  457|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z81527-9|CAI91172.1|  577|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z81527-8|CAI91171.1|  537|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z81527-7|CAI91170.1|  517|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical pr...    26   7.3  
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    26   9.7  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    26   9.7  

>Z79754-1|CAB02090.1|  457|Caenorhabditis elegans Hypothetical
           protein F25H2.1 protein.
          Length = 457

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 321 RPRNFRKKGYKVFASRINI 265
           +PR FRK+ YKV   RIN+
Sbjct: 240 QPRRFRKQLYKVIIFRINV 258


>Z81527-9|CAI91172.1|  577|Caenorhabditis elegans Hypothetical
           protein F35E12.7d protein.
          Length = 577

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -1

Query: 328 TPPSAQFS*KGIQSFCFTY*YIDSSNFQLLIN-TKIYLKSLYL--KFYT--ALENDQ 173
           T P    S  G  +F  TY YID +N+Q +I  T  Y  +     K++T  A +NDQ
Sbjct: 108 TLPYEVISKTGNLTFFATYTYIDMTNYQQVIKPTGTYFNATLETDKYFTVQAADNDQ 164


>Z81527-8|CAI91171.1|  537|Caenorhabditis elegans Hypothetical
           protein F35E12.7c protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -1

Query: 328 TPPSAQFS*KGIQSFCFTY*YIDSSNFQLLIN-TKIYLKSLYL--KFYT--ALENDQ 173
           T P    S  G  +F  TY YID +N+Q +I  T  Y  +     K++T  A +NDQ
Sbjct: 108 TLPYEVISKTGNLTFFATYTYIDMTNYQQVIKPTGTYFNATLETDKYFTVQAADNDQ 164


>Z81527-7|CAI91170.1|  517|Caenorhabditis elegans Hypothetical
           protein F35E12.7b protein.
          Length = 517

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -1

Query: 328 TPPSAQFS*KGIQSFCFTY*YIDSSNFQLLIN-TKIYLKSLYL--KFYT--ALENDQ 173
           T P    S  G  +F  TY YID +N+Q +I  T  Y  +     K++T  A +NDQ
Sbjct: 108 TLPYEVISKTGNLTFFATYTYIDMTNYQQVIKPTGTYFNATLETDKYFTVQAADNDQ 164


>Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical
           protein F35E12.7a protein.
          Length = 739

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -1

Query: 328 TPPSAQFS*KGIQSFCFTY*YIDSSNFQLLIN-TKIYLKSLYL--KFYT--ALENDQ 173
           T P    S  G  +F  TY YID +N+Q +I  T  Y  +     K++T  A +NDQ
Sbjct: 108 TLPYEVISKTGNLTFFATYTYIDMTNYQQVIKPTGTYFNATLETDKYFTVQAADNDQ 164


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
           related protein 2 protein.
          Length = 1272

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 127 GHISENVKSSGVKKTTDHFLKQCKILNIN 213
           G I EN+K      T D  ++ CK+ N N
Sbjct: 489 GTIYENIKMGNEHATHDQVVEACKMANAN 517


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
           PGP-2 protein.
          Length = 1272

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 127 GHISENVKSSGVKKTTDHFLKQCKILNIN 213
           G I EN+K      T D  ++ CK+ N N
Sbjct: 489 GTIYENIKMGNEHATHDQVVEACKMANAN 517


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,866,328
Number of Sequences: 27780
Number of extensions: 117267
Number of successful extensions: 237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)