Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0041
         (314 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29537-1|AAK31507.1|  610|Caenorhabditis elegans Vaccinia relate...    32   0.100

>U29537-1|AAK31507.1|  610|Caenorhabditis elegans Vaccinia related
           kinase protein 1 protein.
          Length = 610

 Score = 31.9 bits (69), Expect = 0.100
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 11  PGCRNSARGRRSCVLKQTDVTHKIVILLLSPRHVS*LFCASGCSAQ 148
           PG RN  +GRRS ++K+T   +K     L+ R     F  S CS++
Sbjct: 567 PGVRNFPKGRRSMIIKETSAKYK---ERLASRQTKPTFDDSSCSSE 609


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,802,524
Number of Sequences: 27780
Number of extensions: 86296
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)