Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120110.Seq
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   145   4e-35
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   7.1  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z81586-6|CAB04697.2|  393|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in bl...    28   9.3  
U64859-8|AAC69096.1|  378|Caenorhabditis elegans Prion-like-(q/n...    28   9.3  
U49830-16|AAK31480.1|  392|Caenorhabditis elegans Hypothetical p...    28   9.3  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  145 bits (351), Expect = 4e-35
 Identities = 62/87 (71%), Positives = 74/87 (85%)
 Frame = +3

Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
           G  +CN+E K GDRG +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G+V
Sbjct: 110 GTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLV 169

Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
           AGGGR DKP+LKAGR+YHKYK KRN W
Sbjct: 170 AGGGRTDKPLLKAGRSYHKYKAKRNSW 196



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 42/54 (77%), Positives = 47/54 (87%)
 Frame = +2

Query: 257 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
           KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA++ FRDPYK+KT K   +A EG
Sbjct: 28  KLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAEG 81



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 18/38 (47%), Positives = 30/38 (78%)
 Frame = +1

Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
           ++TGQF++CG KA +++GN++PVG +PEGT    ++ K
Sbjct: 82  MHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENK 119



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +2

Query: 767 VRGVAMNPVEHPHGGGNHQH 826
           VRGVAMNPVEHPHGGGNHQH
Sbjct: 199 VRGVAMNPVEHPHGGGNHQH 218



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/26 (73%), Positives = 20/26 (76%)
 Frame = +3

Query: 177 MGRVIRAQRKGAGSVFVSHTKKRKGA 254
           MGR IR QRKGAG +F SH K RKGA
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGA 26


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 287 HGYIKGVVKDIIHDPGRGAPLAVVHFR 367
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 287 HGYIKGVVKDIIHDPGRGAPLAVVHFR 367
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 582 IGHNPDAKRTRVKLPSGAKKVL 647
           IGH  D +RTR  LP+G KKVL
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVL 77


>AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical
           protein Y14H12A.2 protein.
          Length = 101

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 558 HVPDDLYHPFSLQDCTHGTLRHSSNRHHISNFKSCF 451
           H  DD   P  L +C H  + H     +IS+FKSCF
Sbjct: 31  HFDDD---PIILLNCVHLLVLHFVRICNISSFKSCF 63


>Z81586-6|CAB04697.2|  393|Caenorhabditis elegans Hypothetical
           protein T05F1.8 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -1

Query: 748 LTLYLWYALPAFKIGLSI-RPPPATIP---TMPLLLDGRTFLAP 629
           LT   W+   +FK+ +++ RPPP  +P      L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPQMPESLKKKLGIPGTTEVAP 352


>U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 9 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 22/76 (28%), Positives = 27/76 (35%)
 Frame = -2

Query: 741 CTCGMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQ 562
           C+C    Q     CQ   +QQQ   C C   A+P   QTV +        C QS  +  Q
Sbjct: 37  CSCQQVQQTQSCSCQSAPVQQQAPSCSC---AQPQQTQTVQVQSTQCAPACQQSCRQQCQ 93

Query: 561 RHVPDDLYHPFSLQDC 514
                    P   Q C
Sbjct: 94  SAPAVSQCQPMCQQQC 109


>U64859-8|AAC69096.1|  378|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 57
           protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 22/76 (28%), Positives = 27/76 (35%)
 Frame = -2

Query: 741 CTCGMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQ 562
           C+C    Q     CQ   +QQQ   C C   A+P   QTV +        C QS  +  Q
Sbjct: 37  CSCQQVQQTQSCSCQSAPVQQQAPSCSC---AQPQQTQTVQVQSTQCAPACQQSCRQQCQ 93

Query: 561 RHVPDDLYHPFSLQDC 514
                    P   Q C
Sbjct: 94  SAPAVSQCQPMCQQQC 109


>U49830-16|AAK31480.1|  392|Caenorhabditis elegans Hypothetical
           protein C33F10.12 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -1

Query: 748 LTLYLWYALPAFKIGLSI-RPPPATIP---TMPLLLDGRTFLAP 629
           LT   W+   +FK+ +++ RPPP  +P      L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPRMPESLKKKLGIPGTTEVAP 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,752,556
Number of Sequences: 27780
Number of extensions: 426690
Number of successful extensions: 1192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)