Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120106.Seq
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z83114-9|CAB05553.2|  941|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z83114-8|CAJ76944.1|  875|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AL021483-8|CAI79173.1|  941|Caenorhabditis elegans Hypothetical ...    29   4.9  
Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.        28   8.5  

>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 220  VTAAPPVNTNKPPFSQTTASKQSLINANFA 131
            +  +PP NT KPP   TTA++ + + A  A
Sbjct: 1112 ILKSPPRNTKKPPSRPTTATRPTAVAARTA 1141


>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 220  VTAAPPVNTNKPPFSQTTASKQSLINANFA 131
            +  +PP NT KPP   TTA++ + + A  A
Sbjct: 1112 ILKSPPRNTKKPPSRPTTATRPTAVAARTA 1141


>Z83114-9|CAB05553.2|  941|Caenorhabditis elegans Hypothetical
           protein K09B11.9a protein.
          Length = 941

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = -2

Query: 680 SEKFLMQRSALKGRFIMRTLTKNTLKDSGAVVILTQLSVYSSTPYALVISICSANLTNQT 501
           +E  ++   A++G +  + L  NT+ D+G  V  T L V       L+IS+ +A      
Sbjct: 399 TESIIVVAEAIRGNYTNQELFANTVLDNGEDVPRTSLVV-------LLISM-TAEKQPYK 450

Query: 500 HRCTVFLCIL 471
            RC VF C L
Sbjct: 451 LRCAVFYCFL 460


>Z83114-8|CAJ76944.1|  875|Caenorhabditis elegans Hypothetical
           protein K09B11.9b protein.
          Length = 875

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = -2

Query: 680 SEKFLMQRSALKGRFIMRTLTKNTLKDSGAVVILTQLSVYSSTPYALVISICSANLTNQT 501
           +E  ++   A++G +  + L  NT+ D+G  V  T L V       L+IS+ +A      
Sbjct: 333 TESIIVVAEAIRGNYTNQELFANTVLDNGEDVPRTSLVV-------LLISM-TAEKQPYK 384

Query: 500 HRCTVFLCIL 471
            RC VF C L
Sbjct: 385 LRCAVFYCFL 394


>AL021483-8|CAI79173.1|  941|Caenorhabditis elegans Hypothetical
           protein K09B11.9a protein.
          Length = 941

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = -2

Query: 680 SEKFLMQRSALKGRFIMRTLTKNTLKDSGAVVILTQLSVYSSTPYALVISICSANLTNQT 501
           +E  ++   A++G +  + L  NT+ D+G  V  T L V       L+IS+ +A      
Sbjct: 399 TESIIVVAEAIRGNYTNQELFANTVLDNGEDVPRTSLVV-------LLISM-TAEKQPYK 450

Query: 500 HRCTVFLCIL 471
            RC VF C L
Sbjct: 451 LRCAVFYCFL 460


>Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical
           protein F45D3.5 protein.
          Length = 685

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 197 VNWRRGCDMPYRRRRLQKRIKCIDFDYYGLCSKKMFCNLQTNLQKCVDQH 346
           +NW+R  +  Y   R    +K  D+ YYGL ++       +N +  VD+H
Sbjct: 539 LNWQRSANQEYAAAR----VKLGDYYYYGLGTEVDHSLAFSNYKMAVDRH 584


>U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.
          Length = 685

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 197 VNWRRGCDMPYRRRRLQKRIKCIDFDYYGLCSKKMFCNLQTNLQKCVDQH 346
           +NW+R  +  Y   R    +K  D+ YYGL ++       +N +  VD+H
Sbjct: 539 LNWQRSANQEYAAAR----VKLGDYYYYGLGTEVDHSLAFSNYKMAVDRH 584


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,225,872
Number of Sequences: 27780
Number of extensions: 361219
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)