Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120102.Seq
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81055-7|CAB02897.2|  445|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell l...    28   9.7  
AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kina...    28   9.7  

>Z81055-7|CAB02897.2|  445|Caenorhabditis elegans Hypothetical
           protein F01G10.9 protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 28  LPP-HPSNAKTRKINNSMFMLKNFYKGLPLFKLKYTVVNSTKIVTRKPNDIFNEIDKELN 204
           LPP  P     +++ + +  LK   +  P    + T  +  KI     +    ++ K   
Sbjct: 355 LPPSQPIQPVQQQVGHDILKLKPILQSNPQEMQEATAESCAKITKLAKSFSIKDVSKWAR 414

Query: 205 GNCPFIK 225
           GNCPF++
Sbjct: 415 GNCPFLQ 421


>U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell
           lineage protein 18 protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 19  NNILPPHPSNAKTRKINNSMFMLKNFYKGLPLFKLKYTVVNSTKIVTRKPNDIFN-EIDK 195
           N+I+P  P N   R+    ++  ++ ++ LPL  ++ T       + R+ +D+ N ++D 
Sbjct: 234 NSIIPSKPRNIDVRRALLQLYQDRDAFQSLPL-DMEGTFGEVRYAIWRQVDDVLNGDVDD 292

Query: 196 ELNGNC 213
           E +  C
Sbjct: 293 EEDTFC 298


>AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kinase
           receptor-relatedprotein precursor RYK protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 19  NNILPPHPSNAKTRKINNSMFMLKNFYKGLPLFKLKYTVVNSTKIVTRKPNDIFN-EIDK 195
           N+I+P  P N   R+    ++  ++ ++ LPL  ++ T       + R+ +D+ N ++D 
Sbjct: 255 NSIIPSKPRNIDVRRALLQLYQDRDAFQSLPL-DMEGTFGEVRYAIWRQVDDVLNGDVDD 313

Query: 196 ELNGNC 213
           E +  C
Sbjct: 314 EEDTFC 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,282,983
Number of Sequences: 27780
Number of extensions: 408381
Number of successful extensions: 1041
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)