Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120094.Seq
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AY394006-1|AAQ96373.1|  377|Caenorhabditis elegans endophilin pr...    29   4.0  
AF067617-2|AAC17558.3|  377|Caenorhabditis elegans Uncoordinated...    29   4.0  
AF067617-1|ABQ13063.1|  379|Caenorhabditis elegans Uncoordinated...    29   4.0  
Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 458 KCCR*VYKNETCQMQQSRTVTEIVNSD-EKIQKTYELAE 571
           KC   +  N T +    RTVT IVN+D  K+ K + L E
Sbjct: 34  KCITAMVNNSTVECPFCRTVTNIVNNDITKLLKNFALIE 72


>AY394006-1|AAQ96373.1|  377|Caenorhabditis elegans endophilin
           protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 491 CQMQQSRTVTEIVNSDEKIQKTYELAEFDLKNLSS 595
           C+ +Q R   E++ ++EK++++  LAE  + N+ S
Sbjct: 170 CKKRQQRRDDEMIQAEEKLEESKRLAEMSMFNVLS 204


>AF067617-2|AAC17558.3|  377|Caenorhabditis elegans Uncoordinated
           protein 57, isoform a protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 491 CQMQQSRTVTEIVNSDEKIQKTYELAEFDLKNLSS 595
           C+ +Q R   E++ ++EK++++  LAE  + N+ S
Sbjct: 170 CKKRQQRRDDEMIQAEEKLEESKRLAEMSMFNVLS 204


>AF067617-1|ABQ13063.1|  379|Caenorhabditis elegans Uncoordinated
           protein 57, isoform c protein.
          Length = 379

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 491 CQMQQSRTVTEIVNSDEKIQKTYELAEFDLKNLSS 595
           C+ +Q R   E++ ++EK++++  LAE  + N+ S
Sbjct: 170 CKKRQQRRDDEMIQAEEKLEESKRLAEMSMFNVLS 204


>Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical
           protein H25K10.6 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +2

Query: 473 VYKNETCQMQQSRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 652
           +Y+ +   +  S     I++S   ++   E+A  D +NLS L   ET+  K +    M M
Sbjct: 230 LYELKLVNISYSSLNLSILSSIRNVRGDVEIAATDFENLSFLTGLETITSKHSYLSKMTM 289

Query: 653 LS 658
           L+
Sbjct: 290 LN 291


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 213 SPQTI*TG*LQTCFDHFGCSSNYCFNNYVC 302
           SPQ   +G + TCF +  C+S Y  +N  C
Sbjct: 81  SPQVSASGQVVTCFTNSQCASGYICSNGAC 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,528
Number of Sequences: 27780
Number of extensions: 307183
Number of successful extensions: 750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)