Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120079.Seq
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039711-8|ABS19466.1|  766|Caenorhabditis elegans Hypothetical ...    32   0.49 
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    31   1.1  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    31   1.1  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    31   1.1  
Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    30   1.5  

>AF039711-8|ABS19466.1|  766|Caenorhabditis elegans Hypothetical
           protein F49D11.10 protein.
          Length = 766

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = -1

Query: 364 EIANEVCREENVISSVIVIGDDGKSSTNNCLQ*MCSALVGKRARRSQNQNGRSVNVHHVF 185
           EI + + +E+ VIS  IV    G   T+  L     ++V +    S+N  G  ++V H F
Sbjct: 154 EIPSNIRKEQIVISDRIVSYCQGLEITSIILNDSDFSIVKETKYTSKNTGGHDIDVIHQF 213

Query: 184 DRVMTRSARIV 152
           DR+      +V
Sbjct: 214 DRLSANGNYLV 224


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +3

Query: 504  SILELSNVMTGVRNQNVQLLAALETAKDVI---LTRLNTLLSEITDSLPDLTLMLDKLAE 674
            +I +L N +  +RN+N +L+     A+D     L+R N L  E+ D+  DL    D + +
Sbjct: 894  TIRKLENELEKLRNENKELVGKEARARDAANQQLSRANLLNKELEDTKQDLKHSTD-VNK 952

Query: 675  QLLEAINTMQQTQRN 719
            QL + I  +++   N
Sbjct: 953  QLEQDIRDLKERLAN 967


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +3

Query: 504  SILELSNVMTGVRNQNVQLLAALETAKDVI---LTRLNTLLSEITDSLPDLTLMLDKLAE 674
            +I +L N +  +RN+N +L+     A+D     L+R N L  E+ D+  DL    D + +
Sbjct: 967  TIRKLENELEKLRNENKELVGKEARARDAANQQLSRANLLNKELEDTKQDLKHSTD-VNK 1025

Query: 675  QLLEAINTMQQTQRN 719
            QL + I  +++   N
Sbjct: 1026 QLEQDIRDLKERLAN 1040


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +3

Query: 504  SILELSNVMTGVRNQNVQLLAALETAKDVI---LTRLNTLLSEITDSLPDLTLMLDKLAE 674
            +I +L N +  +RN+N +L+     A+D     L+R N L  E+ D+  DL    D + +
Sbjct: 967  TIRKLENELEKLRNENKELVGKEARARDAANQQLSRANLLNKELEDTKQDLKHSTD-VNK 1025

Query: 675  QLLEAINTMQQTQRN 719
            QL + I  +++   N
Sbjct: 1026 QLEQDIRDLKERLAN 1040


>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 445 EFFPARRIFVAVLAWETMNVTAI*TGTEIAN 353
           E+  AR IFVAV+A   MN+TA+ T  ++ +
Sbjct: 184 EYSTARAIFVAVVAGAVMNITAVLTFRKVVS 214


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/63 (39%), Positives = 33/63 (52%)
 Frame = -1

Query: 280 NCLQ*MCSALVGKRARRSQNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGEQKLLKR 101
           +CL  MCSA +        N N R +   H+FDRV  RS R+V    +F   GEQ+ LK+
Sbjct: 311 HCLA-MCSACLNPLIYAFFNHNFR-IEFMHLFDRVGLRSLRVV----IF---GEQESLKK 361

Query: 100 LQR 92
             R
Sbjct: 362 SMR 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,610,970
Number of Sequences: 27780
Number of extensions: 306968
Number of successful extensions: 828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)