Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120069.Seq
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock tr...    31   1.2  
AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock tr...    31   1.2  
AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical ...    31   1.2  
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    30   1.6  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    30   2.1  
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z11505-6|CAA77586.2|  425|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   6.3  

>AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 595 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 723
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 595 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 723
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical
           protein Y53C10A.12 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 595 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 723
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
           protein K09F6.3 protein.
          Length = 1360

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
 Frame = +2

Query: 320 ERKMSKRKKKVINNNKYILFNSWYTKIKQP--EWPSSPAMWD---LVKNTPELADFVFIF 484
           +++M    KK IN    + F S   K+K     W S+  +     + ++TP LAD+  IF
Sbjct: 602 DQEMKNTGKKAIN---MVEFGSRLKKLKSELEGWKSNITVGGAHRIRRSTPSLADYAHIF 658

Query: 485 DHTEKMGKKWPTDRHRRLQATTQQFQRAKKD 577
            +  K+G     D  ++L    + F++  KD
Sbjct: 659 QNALKVG--GVDDDLKKLMDAVKDFEKTGKD 687


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +3

Query: 483  LITLKRWVKNGRPIDIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKRELRNAR*ALFGVLQ 662
            L+T ++ +K     ++  F+R   NS E++ TD      +     R LRNA   +   L 
Sbjct: 1332 LVTCEQ-IKEDALAELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELS 1390

Query: 663  LVKRDIQ 683
             +K+ ++
Sbjct: 1391 RLKQTVE 1397


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 424 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 299
           A  PLG+L     VPT  Q  F+  N  ++   HF  V+ +R+Y
Sbjct: 72  AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114


>Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical
           protein F20E11.15 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = -2

Query: 505 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLL 344
           T LF++I +   IC+ G+  ++ P       L L+D+ +     V  ++F+ V   N+LL
Sbjct: 186 TLLFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLL 245

Query: 343 LAFGHFAFVLHD 308
              G FA VL +
Sbjct: 246 TNSGPFASVLRE 257


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 293  LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 454
            ++++P M    K S  K++     +Y   +  ++ +K KQ E  + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138


>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 123 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 245
           K N+    EQ   TE  A+ +N+KLL  L   + ++  MDQ
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQ 161


>Z11505-6|CAA77586.2|  425|Caenorhabditis elegans Hypothetical
           protein F59B2.9 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
 Frame = +2

Query: 251 CFVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTK---IKQPEWPS 421
           C  +   K+ +N I + + +   E+K+  R K    +  Y++  +   +   ++   W +
Sbjct: 167 CGADIPAKRTMNRIFDKLTI---EKKLCIRPK---TSENYVIKQALRVEELFLRSARWMT 220

Query: 422 SPAMWDLVKNTPELADFVFIFDHTEKMGKKWPTDRHRRLQATTQQFQRAKKDRLRCLPTQ 601
              + +L     +L+D  F     E   +KW  ++  +++    Q+Q   + +L  L T 
Sbjct: 221 REHLLELNCIVADLSDHNFQCSDFEAFAEKWMNNKSSKVENLRFQWQSDVEFKLENLKTS 280

Query: 602 IWQN*KR 622
            W + +R
Sbjct: 281 RWDSTRR 287


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -2

Query: 673 RLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTMSIGR 515
           RL  C   +  Y+A    LL LP+ +    Q+    S +L RC   T M IGR
Sbjct: 211 RLNECTDSHVIYKA-SEYLLTLPDTK--LSQTTLKLSFDLSRCDSTTLMDIGR 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,983,684
Number of Sequences: 27780
Number of extensions: 403692
Number of successful extensions: 1208
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)