Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120050.Seq
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical p...    32   0.42 
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    31   0.73 
AC098856-8|ABO52819.1|  384|Caenorhabditis elegans Hypothetical ...    31   1.3  
Z32840-2|CAD91625.1|  160|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z32840-1|CAA83679.1|  584|Caenorhabditis elegans Hypothetical pr...    30   1.7  
DQ340623-1|ABC65811.1|  584|Caenorhabditis elegans chondroitin p...    30   1.7  
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    29   3.9  
AL110479-15|CAB54361.2|  400|Caenorhabditis elegans Hypothetical...    29   3.9  
Z46676-2|CAA86662.1|  507|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical pr...    28   6.8  
DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin p...    28   6.8  

>Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical
            protein Y41E3.9 protein.
          Length = 1440

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 19/89 (21%), Positives = 42/89 (47%)
 Frame = +2

Query: 407  ITADISDAQYFKCLNNNESQLMTCINRIRNSDNQTSVPVTLDA*IYPTVRANRYSNTLTT 586
            +T+ I + + F    + +S  +  ++ I    N  ++   ++  +    + NR   ++ T
Sbjct: 1312 LTSAIKEGKQFLITVSKKSSFIFLMDNITKGTNFDTICRRVEKILSAVQQGNRVLQSIGT 1371

Query: 587  IFRTTVANWCAIILKLFPTSNAINQTCLK 673
              +T   N C ++LK FP   A ++ CL+
Sbjct: 1372 FAKT---NKCVLLLKKFPELRAESENCLR 1397


>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
           protein H02I12.1 protein.
          Length = 1319

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 275 NQFMQCVSGRHVVRECPANKIFDRNLMSCVEA 370
           NQF+ CV+G   + +CP + +F+     C E+
Sbjct: 113 NQFISCVAGGAYMAKCPDSLVFNERTQDCRES 144



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 281  FMQCVSGRHVVRECPANKIFDRNLMSC 361
            F +CV GR VV  CP+  +F+  L  C
Sbjct: 1261 FYRCVWGRKVVMTCPSGTVFNPLLSVC 1287



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 120 YLRCFANGAHAVEECPDNYTFDAKTRQCKVNELC 221
           ++ C  NG + +  CP   TFD   R C  +E C
Sbjct: 587 FIFCSGNGINRMAACPIGETFDKTLRSC--SETC 618


>AC098856-8|ABO52819.1|  384|Caenorhabditis elegans Hypothetical
           protein Y37F4.6 protein.
          Length = 384

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 341 DRNLMSCVEAHPCTFNGAGHTYITADISDAQYFKCLNNNESQLMTCINRIRNSDN 505
           DR L+   +A+PC ++   H++   D  D +     ++   +L  C NR  N D+
Sbjct: 48  DRKLLKKNQAYPCPWDDCPHSF--QDPQDMRIHYMFDHESVKLFCCGNRFENYDS 100


>Z32840-2|CAD91625.1|  160|Caenorhabditis elegans Hypothetical
           protein C07G2.1b protein.
          Length = 160

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 278 QFMQCVSGRHVVRECPANKIFDRNLMSC 361
           QF+ C  G   + +CPA+ I+D  +++C
Sbjct: 77  QFLTCSGGISRIMDCPADLIYDPRIVAC 104


>Z32840-1|CAA83679.1|  584|Caenorhabditis elegans Hypothetical
           protein C07G2.1a protein.
          Length = 584

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 278 QFMQCVSGRHVVRECPANKIFDRNLMSC 361
           QF+ C  G   + +CPA+ I+D  +++C
Sbjct: 77  QFLTCSGGISRIMDCPADLIYDPRIVAC 104


>DQ340623-1|ABC65811.1|  584|Caenorhabditis elegans chondroitin
           proteoglycan-1 protein.
          Length = 584

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 278 QFMQCVSGRHVVRECPANKIFDRNLMSC 361
           QF+ C  G   + +CPA+ I+D  +++C
Sbjct: 77  QFLTCSGGISRIMDCPADLIYDPRIVAC 104


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 23/89 (25%), Positives = 36/89 (40%)
 Frame = -1

Query: 666 HV*LIAFDVGNNFKIIAHQLATVVRNIVVSVFEYLLARTVG*IYASRVTGTLVWLSEFLI 487
           HV L    V N+ K I    +    N   S+ +YL   T+  I    V GT  WL E   
Sbjct: 94  HVILFLLAVFNSLKYI---FSFHFMNSQTSIHKYLPRFTLCIILKDAVFGTSFWLDELKY 150

Query: 486 RFMHVISCDSLLFKHLKYCASLISAVMYV 400
               +  C  + F    +  S+++  +Y+
Sbjct: 151 LNDDIFECFIISFVFFNFVISVLTPFIYI 179


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 278 QFMQCVSGRHVVRECPANKIFDRNLMSCVEAH 373
           +F+ CVSG     +CP + ++ +NL  C   H
Sbjct: 41  RFLACVSGEARYMDCPEDLVYHKNLEFCDWRH 72



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 275 NQFMQCVSGRHVVRECPANKIFDRNLMSC 361
           N F  C  G    R CPAN +F+  + SC
Sbjct: 192 NVFFSCSEGIAHRRNCPANLVFNPAISSC 220



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 284 MQCVSGRHVVRECPANKIFDRNLMSC 361
           + C +GR  + ECP + +F+ N + C
Sbjct: 327 LSCQNGRENIFECPPSLVFNENSLIC 352


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 120 YLRCFANGAHAVEECPDNYTFDAKTRQCKVNELC 221
           +L C  NG   V +C DN  FD +   C+   +C
Sbjct: 369 FLSC-DNGVGRVIQCADNLVFDTRVSACEFAAIC 401


>AL110479-15|CAB54361.2|  400|Caenorhabditis elegans Hypothetical
           protein Y105C5B.16 protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +2

Query: 407 ITADISDAQYFKCLNNNESQLMTCINRIRNSDNQTSVPVTLDA*IYP-TVRANRYSNTLT 583
           I  +I D + FK + N+E +L+   NR+       ++  T+D  I+  T+R N       
Sbjct: 206 IYEEIMDERIFKTMGNSEWKLLNLTNRVEALVYNDNMG-TMDLAIFEITIRRNPLYYIYM 264

Query: 584 TIFRTTVANWCAII 625
            +F + + N+ +I+
Sbjct: 265 IVFPSFIINFVSIV 278


>Z46676-2|CAA86662.1|  507|Caenorhabditis elegans Hypothetical
           protein C08B11.2 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 120 YLRCFANGAHAVEECPDNYTFDAKTRQCKVNELCENRPDGYILSY 254
           YL+ F +    VEE   N+  +A   QC  + LCE+R   + LS+
Sbjct: 258 YLKLFESVISGVEE---NFNPEAIVLQCGSDSLCEDRLGQFALSF 299


>U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical
           protein B0280.5 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 278 QFMQCVSGRHVVRECPANKIFDRNLMSCVEAH 373
           QF+ C  G   + +CPA+ I++  L+ C   H
Sbjct: 40  QFLTCSGGIARIMDCPADLIYNEPLLICDWRH 71


>DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin
           proteoglycan-2 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 278 QFMQCVSGRHVVRECPANKIFDRNLMSCVEAH 373
           QF+ C  G   + +CPA+ I++  L+ C   H
Sbjct: 40  QFLTCSGGIARIMDCPADLIYNEPLLICDWRH 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,576,969
Number of Sequences: 27780
Number of extensions: 443146
Number of successful extensions: 1235
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)