Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0108
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024201-11|ABQ13050.1|  284|Caenorhabditis elegans Hypothetical...    73   2e-13
AC024201-10|ABQ13051.1|  281|Caenorhabditis elegans Hypothetical...    66   1e-11
AC006695-17|AAF39983.2|  327|Caenorhabditis elegans Hypothetical...    29   1.8  
Z35641-4|CAA84708.1|  497|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z29443-13|CAA82579.1|  497|Caenorhabditis elegans Hypothetical p...    29   2.4  
AF100307-9|AAC68938.1|  321|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical p...    28   4.1  

>AC024201-11|ABQ13050.1|  284|Caenorhabditis elegans Hypothetical
           protein Y71F9B.9a protein.
          Length = 284

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 38/93 (40%), Positives = 53/93 (56%)
 Frame = +2

Query: 56  MSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCE 235
           MS GLG RYAF G  ET HLNA G++ Y  RY   I  V  +MGP P  T  K  N + E
Sbjct: 191 MSAGLGPRYAFNGTCETVHLNAFGVRDYFKRYAAGITAVLKDMGPIPDFTDEKVINKLEE 250

Query: 236 QLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEMN 334
           +LE  +    ++  +  R+  L+ ++ LKK++N
Sbjct: 251 ELEPKMSTLNIRKHQAEREEKLVEIAKLKKDLN 283


>AC024201-10|ABQ13051.1|  281|Caenorhabditis elegans Hypothetical
           protein Y71F9B.9b protein.
          Length = 281

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 37/93 (39%), Positives = 53/93 (56%)
 Frame = +2

Query: 56  MSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCE 235
           MS GLG RYAF G  ET HLNA G++ Y  RY   I   + +MGP P  T  K  N + E
Sbjct: 191 MSAGLGPRYAFNGTCETVHLNAFGVRDYFKRYAAGI---TADMGPIPDFTDEKVINKLEE 247

Query: 236 QLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEMN 334
           +LE  +    ++  +  R+  L+ ++ LKK++N
Sbjct: 248 ELEPKMSTLNIRKHQAEREEKLVEIAKLKKDLN 280


>AC006695-17|AAF39983.2|  327|Caenorhabditis elegans Hypothetical
           protein W06H8.6 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +2

Query: 179 EMGPAPRMTTNKSRNSVCEQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEMNKKYQSS*C 358
           E  P+P  T+ +S NS+          E+  +R   R L    LS L++E N   +    
Sbjct: 62  ERFPSPLATSAESVNSIKSSCSSRSSAERETERAQRRQLLNTSLSKLREEANMPLRKHLL 121

Query: 359 VFH 367
           +FH
Sbjct: 122 IFH 124


>Z35641-4|CAA84708.1|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.1 protein.
          Length = 497

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 80  YAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQLEKLVP 256
           Y   G L  A L+ +G  + ++ Y ET  +++NE          ++R S C  L    P
Sbjct: 375 YRLSGVLLIAQLSTKGSLTALEGYTETAVKIANENRDVISGFITQTRVSACSDLLNWTP 433


>Z29443-13|CAA82579.1|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.1 protein.
          Length = 497

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 80  YAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQLEKLVP 256
           Y   G L  A L+ +G  + ++ Y ET  +++NE          ++R S C  L    P
Sbjct: 375 YRLSGVLLIAQLSTKGSLTALEGYTETAVKIANENRDVISGFITQTRVSACSDLLNWTP 433


>AF100307-9|AAC68938.1|  321|Caenorhabditis elegans Hypothetical
           protein T12B5.11 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 167 RVSNEMGPAPRMTTNKSRNSVCEQLEKLVPIEKLQDRRNWRDL--CLMRLSL 316
           R+    GP      N   N V + LEKL P+++L+ R+  R+L  C+ R  +
Sbjct: 14  RIHRSFGPISPTLYNMPINIVDQVLEKLEPMDRLKIRKVCRNLRTCVDRFGI 65


>Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical
           protein ZK856.12 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 167 RVSNEMGPAPRMTTNKSRNSVCEQLEKLVPIEKLQDRRNWRDLCLM 304
           R+ N+  P  R   N +   +C + E +   +  +D   +RD  L+
Sbjct: 16  RMYNKQAPTKREELNPTERVICSRFETIFDYDPFKDEYTFRDQALL 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,086,797
Number of Sequences: 27780
Number of extensions: 272305
Number of successful extensions: 606
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)