Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0101
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical pr...    51   3e-07
Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical pr...    51   3e-07
AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical ...    28   2.7  
Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical pr...    27   4.7  
AF100304-4|AAC68910.1|  568|Caenorhabditis elegans Gex interacti...    27   6.2  
AF100304-3|AAP82634.1|  542|Caenorhabditis elegans Gex interacti...    27   6.2  
AF100304-2|AAU20837.1|  564|Caenorhabditis elegans Gex interacti...    27   6.2  
AF100304-1|AAC68913.1|  545|Caenorhabditis elegans Gex interacti...    27   6.2  

>Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +1

Query: 82  LKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLP 186
           LK FV +C+  P +LH P+  FFKDYL+SLG +LP
Sbjct: 7   LKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLP 41


>Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +1

Query: 82  LKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLP 186
           LK FV +C+  P +LH P+  FFKDYL+SLG +LP
Sbjct: 7   LKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLP 41


>AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical
           protein Y17G7B.5a protein.
          Length = 881

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 242 MKKKWNRHLTRNRSLNQM 295
           MKK ++RHLT NRS N++
Sbjct: 788 MKKTFSRHLTENRSANEL 805


>AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical
           protein T05B4.12 protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 137 CGWCNSCGCVLHISTKDFNWSNCSALYGQLIFLCRFRNPSC-RIPA 3
           CG+CNS GCV  ++    + S C+ + G   F+ ++   +C R P+
Sbjct: 146 CGFCNSGGCVDAVTNCGNDLSICNTV-GMQTFVNQYCQKTCGRCPS 190


>Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical
           protein T07C12.9 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 108 NTAATITPSTIGVF*GLSDISWCIIADRYFWC 203
           NTA  + P    ++ G+ + +WC    R F C
Sbjct: 208 NTAGAVKPGGYLIYGGIFEETWCSFGGRKFTC 239


>AF100304-4|AAC68910.1|  568|Caenorhabditis elegans Gex interacting
           protein protein4, isoform b protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +2

Query: 332 KQTNLKTWVIQTRRSLKKKEMSQMKSALKQ 421
           ++ NLK  + Q R+  ++KEM +++S L++
Sbjct: 169 RELNLKRTLAQKRKRQREKEMEELESILRE 198


>AF100304-3|AAP82634.1|  542|Caenorhabditis elegans Gex interacting
           protein protein4, isoform c protein.
          Length = 542

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +2

Query: 332 KQTNLKTWVIQTRRSLKKKEMSQMKSALKQ 421
           ++ NLK  + Q R+  ++KEM +++S L++
Sbjct: 169 RELNLKRTLAQKRKRQREKEMEELESILRE 198


>AF100304-2|AAU20837.1|  564|Caenorhabditis elegans Gex interacting
           protein protein4, isoform f protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +2

Query: 332 KQTNLKTWVIQTRRSLKKKEMSQMKSALKQ 421
           ++ NLK  + Q R+  ++KEM +++S L++
Sbjct: 165 RELNLKRTLAQKRKRQREKEMEELESILRE 194


>AF100304-1|AAC68913.1|  545|Caenorhabditis elegans Gex interacting
           protein protein4, isoform a protein.
          Length = 545

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +2

Query: 332 KQTNLKTWVIQTRRSLKKKEMSQMKSALKQ 421
           ++ NLK  + Q R+  ++KEM +++S L++
Sbjct: 146 RELNLKRTLAQKRKRQREKEMEELESILRE 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,568,231
Number of Sequences: 27780
Number of extensions: 148805
Number of successful extensions: 378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)