Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0062
(509 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr... 36 0.023
Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical pr... 36 0.023
AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin ... 36 0.023
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 32 0.21
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 32 0.21
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 32 0.21
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 32 0.21
Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 30 1.1
AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical... 30 1.1
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 30 1.1
U41019-2|AAA82328.1| 518|Caenorhabditis elegans Hypothetical pr... 29 2.0
DQ150101-1|AAZ77787.1| 386|Caenorhabditis elegans synthetic mul... 29 2.0
AF025452-10|AAB70947.2| 386|Caenorhabditis elegans Hypothetical... 29 2.0
AF047653-6|AAC04462.2| 463|Caenorhabditis elegans Hypothetical ... 29 2.6
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 2.6
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p... 28 3.4
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella... 28 3.4
Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical pr... 28 4.5
U64601-9|AAB04578.1| 314|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF228528-1|AAF34189.1| 314|Caenorhabditis elegans calumenin-lik... 28 4.5
Z73910-4|CAA98136.1| 662|Caenorhabditis elegans Hypothetical pr... 27 7.9
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 27 7.9
U00065-8|AAL02473.1| 501|Caenorhabditis elegans Hypothetical pr... 27 7.9
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr... 27 7.9
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr... 27 7.9
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 27 7.9
AL023811-1|CAA19422.2| 947|Caenorhabditis elegans Hypothetical ... 27 7.9
>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
protein T24A11.1b protein.
Length = 1006
Score = 35.5 bits (78), Expect = 0.023
Identities = 23/75 (30%), Positives = 31/75 (41%)
Frame = +2
Query: 251 KKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSENRKSL 430
K+ P T P + +T V+ + + VD K P ST PS+N SL
Sbjct: 644 KEERPLSGCTTPMNTSTSTNLVKSKSSESINSLNVDGSAKESSQQHPTCSTTPSDNTNSL 703
Query: 431 PKDSASNVQGSRIIP 475
P S S +Q S P
Sbjct: 704 PM-STSFIQQSLYQP 717
>Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical
protein T24A11.1a protein.
Length = 938
Score = 35.5 bits (78), Expect = 0.023
Identities = 23/75 (30%), Positives = 31/75 (41%)
Frame = +2
Query: 251 KKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSENRKSL 430
K+ P T P + +T V+ + + VD K P ST PS+N SL
Sbjct: 617 KEERPLSGCTTPMNTSTSTNLVKSKSSESINSLNVDGSAKESSQQHPTCSTTPSDNTNSL 676
Query: 431 PKDSASNVQGSRIIP 475
P S S +Q S P
Sbjct: 677 PM-STSFIQQSLYQP 690
>AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin
homologous protein 1 protein.
Length = 930
Score = 35.5 bits (78), Expect = 0.023
Identities = 23/75 (30%), Positives = 31/75 (41%)
Frame = +2
Query: 251 KKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSENRKSL 430
K+ P T P + +T V+ + + VD K P ST PS+N SL
Sbjct: 644 KEERPLSGCTTPMNTSTSTNLVKSKSSESINSLNVDGSAKESSQQHPTCSTTPSDNTNSL 703
Query: 431 PKDSASNVQGSRIIP 475
P S S +Q S P
Sbjct: 704 PM-STSFIQQSLYQP 717
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 32.3 bits (70), Expect = 0.21
Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 1/128 (0%)
Frame = +2
Query: 53 PVTPRKQNSQPQPEFSAQPQKEAVYVNQ-EPIYYCPDSPKSIPPWVXXXXXXXXXXXXVW 229
P TP+ + P+ P+ AV + EP+ P+ P
Sbjct: 469 PKTPKTPRTPRTPKTPRTPKTPAVVEPEPEPVAEEPEPVAEPEPEPEPVAEAEPEAEPAV 528
Query: 230 CQRPLDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRP 409
+ P + + E T P EPE V S E + E +PP +Q+S S P
Sbjct: 529 EEEPAEEPEPAADETATEPTAEEAEPEAVEESIEKTEVVEEESAPPAARQSSP---SPPP 585
Query: 410 SENRKSLP 433
+ R P
Sbjct: 586 ARRRPQSP 593
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 32.3 bits (70), Expect = 0.21
Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 1/128 (0%)
Frame = +2
Query: 53 PVTPRKQNSQPQPEFSAQPQKEAVYVNQ-EPIYYCPDSPKSIPPWVXXXXXXXXXXXXVW 229
P TP+ + P+ P+ AV + EP+ P+ P
Sbjct: 419 PKTPKTPRTPRTPKTPRTPKTPAVVEPEPEPVAEEPEPVAEPEPEPEPVAEAEPEAEPAV 478
Query: 230 CQRPLDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRP 409
+ P + + E T P EPE V S E + E +PP +Q+S S P
Sbjct: 479 EEEPAEEPEPAADETATEPTAEEAEPEAVEESIEKTEVVEEESAPPAARQSSP---SPPP 535
Query: 410 SENRKSLP 433
+ R P
Sbjct: 536 ARRRPQSP 543
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 32.3 bits (70), Expect = 0.21
Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 1/128 (0%)
Frame = +2
Query: 53 PVTPRKQNSQPQPEFSAQPQKEAVYVNQ-EPIYYCPDSPKSIPPWVXXXXXXXXXXXXVW 229
P TP+ + P+ P+ AV + EP+ P+ P
Sbjct: 469 PKTPKTPRTPRTPKTPRTPKTPAVVEPEPEPVAEEPEPVAEPEPEPEPVAEAEPEAEPAV 528
Query: 230 CQRPLDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRP 409
+ P + + E T P EPE V S E + E +PP +Q+S S P
Sbjct: 529 EEEPAEEPEPAADETATEPTAEEAEPEAVEESIEKTEVVEEESAPPAARQSSP---SPPP 585
Query: 410 SENRKSLP 433
+ R P
Sbjct: 586 ARRRPQSP 593
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 32.3 bits (70), Expect = 0.21
Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 1/128 (0%)
Frame = +2
Query: 53 PVTPRKQNSQPQPEFSAQPQKEAVYVNQ-EPIYYCPDSPKSIPPWVXXXXXXXXXXXXVW 229
P TP+ + P+ P+ AV + EP+ P+ P
Sbjct: 469 PKTPKTPRTPRTPKTPRTPKTPAVVEPEPEPVAEEPEPVAEPEPEPEPVAEAEPEAEPAV 528
Query: 230 CQRPLDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRP 409
+ P + + E T P EPE V S E + E +PP +Q+S S P
Sbjct: 529 EEEPAEEPEPAADETATEPTAEEAEPEAVEESIEKTEVVEEESAPPAARQSSP---SPPP 585
Query: 410 SENRKSLP 433
+ R P
Sbjct: 586 ARRRPQSP 593
>Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 29.9 bits (64), Expect = 1.1
Identities = 28/90 (31%), Positives = 40/90 (44%)
Frame = +2
Query: 239 PLDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSEN 418
P + SPPR +P RDA E +R S E REV P ++ + P ++ PS
Sbjct: 229 PPPRRASPPRRTSSPKRDARPARE-IRDSRE----PREVRRSPPPRRAASPRKASSPSAP 283
Query: 419 RKSLPKDSASNVQGSRIIPIQMEVSSTETR 508
K+ K S GS ++ E +S R
Sbjct: 284 AKNDRKRERS-PSGSVAPSVRRESASPPRR 312
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 29.9 bits (64), Expect = 1.1
Identities = 28/90 (31%), Positives = 40/90 (44%)
Frame = +2
Query: 239 PLDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSEN 418
P + SPPR +P RDA E +R S E REV P ++ + P ++ PS
Sbjct: 229 PPPRRASPPRRTSSPKRDARPARE-IRDSRE----PREVRRSPPPRRAASPRKASSPSAP 283
Query: 419 RKSLPKDSASNVQGSRIIPIQMEVSSTETR 508
K+ K S GS ++ E +S R
Sbjct: 284 AKNDRKRERS-PSGSVAPSVRRESASPPRR 312
>AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 29.9 bits (64), Expect = 1.1
Identities = 28/90 (31%), Positives = 40/90 (44%)
Frame = +2
Query: 239 PLDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSEN 418
P + SPPR +P RDA E +R S E REV P ++ + P ++ PS
Sbjct: 229 PPPRRASPPRRTSSPKRDARPARE-IRDSRE----PREVRRSPPPRRAASPRKASSPSAP 283
Query: 419 RKSLPKDSASNVQGSRIIPIQMEVSSTETR 508
K+ K S GS ++ E +S R
Sbjct: 284 AKNDRKRERS-PSGSVAPSVRRESASPPRR 312
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 29.9 bits (64), Expect = 1.1
Identities = 28/90 (31%), Positives = 40/90 (44%)
Frame = +2
Query: 239 PLDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSEN 418
P + SPPR +P RDA E +R S E REV P ++ + P ++ PS
Sbjct: 229 PPPRRASPPRRTSSPKRDARPARE-IRDSRE----PREVRRSPPPRRAASPRKASSPSAP 283
Query: 419 RKSLPKDSASNVQGSRIIPIQMEVSSTETR 508
K+ K S GS ++ E +S R
Sbjct: 284 AKNDRKRERS-PSGSVAPSVRRESASPPRR 312
>U41019-2|AAA82328.1| 518|Caenorhabditis elegans Hypothetical
protein C04E7.3 protein.
Length = 518
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = +2
Query: 263 PRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSENRKSLPKDS 442
PRE P + A P W+ + Q G ++ +P K QQ++ RP S PK +
Sbjct: 95 PRESAVPNKRAAAAPPWIGYTQTYQ-GQQKYRNPQKLQQST---IKKRPKPETTSGPKKA 150
Query: 443 ASNVQGSRIIPIQMEVSSTE 502
+ S + +S E
Sbjct: 151 SKPTSLSEPKKTECSISEDE 170
>DQ150101-1|AAZ77787.1| 386|Caenorhabditis elegans synthetic
multivulva protein LIN-8 protein.
Length = 386
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 378 RQVSRCGQHGLRKIAKVCPKIVLLTFREVELFPYKWKF 491
+Q+ +CG+ LR +V LT +VE + ++W+F
Sbjct: 112 KQIYKCGKDNLRNRLRVAIVSKRLTPAQVEAYMWRWEF 149
>AF025452-10|AAB70947.2| 386|Caenorhabditis elegans Hypothetical
protein B0454.1 protein.
Length = 386
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 378 RQVSRCGQHGLRKIAKVCPKIVLLTFREVELFPYKWKF 491
+Q+ +CG+ LR +V LT +VE + ++W+F
Sbjct: 112 KQIYKCGKDNLRNRLRVAIVSKRLTPAQVEAYMWRWEF 149
>AF047653-6|AAC04462.2| 463|Caenorhabditis elegans Hypothetical
protein W02F12.5 protein.
Length = 463
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +2
Query: 23 AGSLPIKHLIPVTPRKQNSQPQPEFSAQPQKEAVYVNQEPIYYCPDSPKSIPP 181
+ S P K P K+ S+P P + + K AV P D PKS PP
Sbjct: 144 SSSAPAKEEPKSAPAKEESKPAP--AKEDSKPAVTAAAPPKPVSGDIPKSAPP 194
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 62 PRKQNSQPQPEFSAQPQKEAVYVNQEPIYYCPDSPKSIPP 181
PR Q QPQP+ QPQ + Y+ Q P P PP
Sbjct: 2037 PRPQ-PQPQPQPQPQPQPQQPYI-QRPALTLPFQQPQYPP 2074
Score = 23.8 bits (49), Expect(2) = 2.8
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +2
Query: 263 PRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQT-SQPVWSTRPSENRKSLPKD 439
P + P + P+ + N++ + + E+ P Q + S PV+ PSE K
Sbjct: 515 PEMIEVAPGNVEKTPD--QTDNQVPETSHEMAPAPAPQPSPSSPVYGPTPSEPAKPSMPS 572
Query: 440 SASNVQGSRIIP 475
S Q IP
Sbjct: 573 GESPAQPEPSIP 584
Score = 23.0 bits (47), Expect(2) = 2.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 35 PIKHLIPVTPRKQNSQPQPEFSAQPQKEAVYVNQEPIYYCPDSPKS 172
P +IP + Q SQP+ AQP A + + P P++ K+
Sbjct: 460 PAPSVIPTS--SQPSQPKQTQPAQPTPSAPKIPEGPAQPSPNAVKT 503
>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical protein
B0379.3b protein.
Length = 1050
Score = 28.3 bits (60), Expect = 3.4
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Frame = +2
Query: 53 PVTPRKQNSQPQPEFSAQPQKEAVYVNQEP-IYYCPDSPKSIPPW-VXXXXXXXXXXXXV 226
P P SQP + QP + AVY N P Y P P P V +
Sbjct: 700 PAPPPVNQSQP----ANQPMQTAVYQNSHPGAPYIPQQPTYQPQLPVQQPQPHQYAPQPI 755
Query: 227 WCQRPLD----GKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPV 394
Q+P+ G++ PP P P++ N +Q + SP Y Q QP
Sbjct: 756 HHQQPIHQPMHGQQYPPVNQQQPIYQ-QPAPQYPPY-NSIQNNPQHGPSPFNYSQVPQPA 813
Query: 395 WS 400
++
Sbjct: 814 YN 815
>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical protein
B0379.3a protein.
Length = 1054
Score = 28.3 bits (60), Expect = 3.4
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Frame = +2
Query: 53 PVTPRKQNSQPQPEFSAQPQKEAVYVNQEP-IYYCPDSPKSIPPW-VXXXXXXXXXXXXV 226
P P SQP + QP + AVY N P Y P P P V +
Sbjct: 704 PAPPPVNQSQP----ANQPMQTAVYQNSHPGAPYIPQQPTYQPQLPVQQPQPHQYAPQPI 759
Query: 227 WCQRPLD----GKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPV 394
Q+P+ G++ PP P P++ N +Q + SP Y Q QP
Sbjct: 760 HHQQPIHQPMHGQQYPPVNQQQPIYQ-QPAPQYPPY-NSIQNNPQHGPSPFNYSQVPQPA 817
Query: 395 WS 400
++
Sbjct: 818 YN 819
>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
protein F23B2.4 protein.
Length = 1192
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 332 MQKGAREVDSPPKY-QQTSQPVWSTRPSENRKSLPKDSASNVQG 460
++KG + P Q+ ++P+W S NR +DS N G
Sbjct: 165 LRKGTNATEEPSIIIQRDNEPIWGIAFSSNRTFASRDSQGNPMG 208
>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1192
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 332 MQKGAREVDSPPKY-QQTSQPVWSTRPSENRKSLPKDSASNVQG 460
++KG + P Q+ ++P+W S NR +DS N G
Sbjct: 165 LRKGTNATEEPSIIIQRDNEPIWGIAFSSNRTFASRDSQGNPMG 208
>Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical
protein F29C12.1b protein.
Length = 590
Score = 27.9 bits (59), Expect = 4.5
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Frame = +2
Query: 62 PRKQNSQPQPEFSAQPQKEAVYVNQEPIYYCPDSPKSIPPWVXXXXXXXXXXXXVWCQRP 241
P+ Q Q Q +F Q Q +A + Q+P + P P + P Q P
Sbjct: 96 PQVQRPQHQQQF--QQQVQAQHQQQQPQFNIPLQPHAQPVQFAAPNYQGNQIPYPQAQAP 153
Query: 242 LDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDS-PPKY-QQTSQPVWSTRPSE 415
+ + LV P+ A+ +P R+ ++ + E + +Y QQ +Q + +P +
Sbjct: 154 AQIQTATLAPLVEAPKVASFDPNLSRQPADLAQPLPEYQTGQVQYPQQAAQIPFGQQPQQ 213
>U64601-9|AAB04578.1| 314|Caenorhabditis elegans Hypothetical
protein M03F4.7a protein.
Length = 314
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 302 EPEWVRRSNEMQKGAREVDSPPKYQQTSQPVW 397
EP+WV+ EM K R+ D K Q W
Sbjct: 223 EPDWVQSEREMFKEHRDKDGDGKLNQEEMRDW 254
>AF228528-1|AAF34189.1| 314|Caenorhabditis elegans calumenin-like
protein protein.
Length = 314
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 302 EPEWVRRSNEMQKGAREVDSPPKYQQTSQPVW 397
EP+WV+ EM K R+ D K Q W
Sbjct: 223 EPDWVQSEREMFKEHRDKDGDGKLNQEEMRDW 254
>Z73910-4|CAA98136.1| 662|Caenorhabditis elegans Hypothetical
protein M117.4 protein.
Length = 662
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Frame = +2
Query: 65 RKQNSQPQPEFSAQPQKEAV---YVNQE-----PIYYCPDSPKSI 175
RK N + + + +P KE + YV E PI +CPD PK +
Sbjct: 385 RKMNFRAASDCTVEPTKEMLAKSYVRPEHNSNDPIDFCPDLPKKL 429
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 27.1 bits (57), Expect = 7.9
Identities = 41/165 (24%), Positives = 53/165 (32%), Gaps = 5/165 (3%)
Frame = +2
Query: 20 AAGSLPIK-HLIPVTPRKQNSQPQ--PEFSAQPQKEAVYVNQEPIYYCPDSPKSIPPWVX 190
AAG P+ P +P + P P + Y P Y P SP P
Sbjct: 1602 AAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPSSPS 1660
Query: 191 XXXXXXXXXXXVWCQRPLDGKKSP--PRELVTPPRDANTEPEWVRRSNEMQKGAREVDSP 364
P SP P T P + T P + S + G S
Sbjct: 1661 YSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSS 1720
Query: 365 PKYQQTSQPVWSTRPSENRKSLPKDSASNVQGSRIIPIQMEVSST 499
PKY +S T PS + S P+ S ++ Q S P S T
Sbjct: 1721 PKYSPSSPTYSPTSPSYSPTS-PQYSPTSPQYSPSSPTYTPSSPT 1764
>U00065-8|AAL02473.1| 501|Caenorhabditis elegans Hypothetical
protein D1044.2b protein.
Length = 501
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 68 KQNSQPQPEFSAQPQKEAVYVNQEPIYYCPDS-PKSIPPWV 187
K ++P+P FS+ P + V ++ E PD+ + PP+V
Sbjct: 151 KAVTRPRPNFSSTPHRPIVSLSDEDFELGPDAFEVTFPPFV 191
>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
protein D1044.2c protein.
Length = 1090
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 68 KQNSQPQPEFSAQPQKEAVYVNQEPIYYCPDS-PKSIPPWV 187
K ++P+P FS+ P + V ++ E PD+ + PP+V
Sbjct: 701 KAVTRPRPNFSSTPHRPIVSLSDEDFELGPDAFEVTFPPFV 741
>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
protein D1044.2a protein.
Length = 1051
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 68 KQNSQPQPEFSAQPQKEAVYVNQEPIYYCPDS-PKSIPPWV 187
K ++P+P FS+ P + V ++ E PD+ + PP+V
Sbjct: 701 KAVTRPRPNFSSTPHRPIVSLSDEDFELGPDAFEVTFPPFV 741
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 27.1 bits (57), Expect = 7.9
Identities = 41/165 (24%), Positives = 53/165 (32%), Gaps = 5/165 (3%)
Frame = +2
Query: 20 AAGSLPIK-HLIPVTPRKQNSQPQ--PEFSAQPQKEAVYVNQEPIYYCPDSPKSIPPWVX 190
AAG P+ P +P + P P + Y P Y P SP P
Sbjct: 1609 AAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPSSPS 1667
Query: 191 XXXXXXXXXXXVWCQRPLDGKKSP--PRELVTPPRDANTEPEWVRRSNEMQKGAREVDSP 364
P SP P T P + T P + S + G S
Sbjct: 1668 YSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSS 1727
Query: 365 PKYQQTSQPVWSTRPSENRKSLPKDSASNVQGSRIIPIQMEVSST 499
PKY +S T PS + S P+ S ++ Q S P S T
Sbjct: 1728 PKYSPSSPTYSPTSPSYSPTS-PQYSPTSPQYSPSSPTYTPSSPT 1771
>AL023811-1|CAA19422.2| 947|Caenorhabditis elegans Hypothetical
protein C51F7.1 protein.
Length = 947
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +2
Query: 359 SPPKYQQTSQPVWSTRPSENRKSLPKDSASNVQGSRIIPIQM 484
+PP Y+ T QP+++ P + P+ S + +P ++
Sbjct: 711 NPPPYESTFQPIFAVGPKTSSSPPPQSQPSLTASTGPLPAEI 752
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,142,598
Number of Sequences: 27780
Number of extensions: 260567
Number of successful extensions: 1031
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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