Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C23
         (179 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016429-1|AAB65365.2|  518|Caenorhabditis elegans Hypothetical ...    28   1.0  
Z82069-4|CAB04905.1|  290|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U88184-8|AAK31515.1|  301|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z81076-1|CAB03050.2|  186|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U39646-7|AAA80371.1|  623|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U39646-6|AAK72058.1|  624|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U39646-5|AAK72057.1|  678|Caenorhabditis elegans Hypothetical pr...    25   7.1  

>AF016429-1|AAB65365.2|  518|Caenorhabditis elegans Hypothetical
           protein T21H3.4 protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 7/26 (26%), Positives = 21/26 (80%)
 Frame = +2

Query: 41  CIVLVFISVLCLCVSMKGTKSRFVID 118
           C++ VF++V+C+ ++ +  K+++++D
Sbjct: 479 CVLNVFLTVICVLMAFRVLKNKYIMD 504


>Z82069-4|CAB04905.1|  290|Caenorhabditis elegans Hypothetical
           protein W04A8.5 protein.
          Length = 290

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 50  LVFISVLCLCVSMKGTKSRFVIDNDAGGDDAMAI 151
           +VF   L +    K +KSRFV +N+ GG+ ++ I
Sbjct: 247 VVFRPGLTVLKEYKPSKSRFVTENNNGGEMSICI 280


>U88184-8|AAK31515.1|  301|Caenorhabditis elegans Hypothetical
           protein F36H5.4 protein.
          Length = 301

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 2   FVPNSMCLRMNKTCIVLVFISVLCLCVSMKGTKSRFVID 118
           F   S C +       LVF+++L L  S+ G  SR  ID
Sbjct: 113 FTIKSYCSKRYLMAATLVFLNILFLVNSIVGLYSRIAID 151


>Z81076-1|CAB03050.2|  186|Caenorhabditis elegans Hypothetical
           protein F35C5.1 protein.
          Length = 186

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
 Frame = +2

Query: 17  MCLRMNKTCIVLVF------ISVLCLCVSMKGTKS 103
           MCL ++ + ++ +F      +SVL +CVS K  KS
Sbjct: 1   MCLHLHLSMVLFLFWPLILVLSVLTVCVSKKSQKS 35


>U39646-7|AAA80371.1|  623|Caenorhabditis elegans Hypothetical
           protein F47B7.2a protein.
          Length = 623

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 5   VPNSMCLRMNKTCIVLVFISVLCLCVSMKGTKSRFVIDND 124
           V  S+C+    T + ++FI V+ L  S  G+    + D D
Sbjct: 8   VAKSLCIAAVITGVFMLFILVVILAFSAGGSSGESLYDKD 47


>U39646-6|AAK72058.1|  624|Caenorhabditis elegans Hypothetical
           protein F47B7.2c protein.
          Length = 624

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 5   VPNSMCLRMNKTCIVLVFISVLCLCVSMKGTKSRFVIDND 124
           V  S+C+    T + ++FI V+ L  S  G+    + D D
Sbjct: 8   VAKSLCIAAVITGVFMLFILVVILAFSAGGSSGESLYDKD 47


>U39646-5|AAK72057.1|  678|Caenorhabditis elegans Hypothetical
           protein F47B7.2b protein.
          Length = 678

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 5   VPNSMCLRMNKTCIVLVFISVLCLCVSMKGTKSRFVIDND 124
           V  S+C+    T + ++FI V+ L  S  G+    + D D
Sbjct: 8   VAKSLCIAAVITGVFMLFILVVILAFSAGGSSGESLYDKD 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,097,663
Number of Sequences: 27780
Number of extensions: 60896
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)