Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A06
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   102   2e-22
Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z82265-1|CAB05172.1|  116|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  102 bits (245), Expect = 2e-22
 Identities = 52/123 (42%), Positives = 68/123 (55%)
 Frame = +1

Query: 88  VNRIYYGRKDHFEIKLKDTSXXXXXXXXXXXXXXXFPAKKEQTRPPRIVKVGIIQHSIAI 267
           V RI YGR  +  +++   +                 A+KEQTR PR+V+V  IQ+ I  
Sbjct: 27  VERILYGRP-YRALEISSIAEKLAQDGDFQLSGYIVDAQKEQTRAPRLVRVAAIQNKIHR 85

Query: 268 PTDRPINEQKKAIFDKVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAE 447
           PT   + EQ+ AI  +V  +I+ A   G N+I  QE W MPFAFCTRE+ PW EFAES  
Sbjct: 86  PTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEAWTMPFAFCTRERLPWTEFAESVY 145

Query: 448 EGP 456
            GP
Sbjct: 146 TGP 148



 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 27/44 (61%), Positives = 37/44 (84%)
 Frame = +2

Query: 455 PTTRFLRELAVKYAMVIVSSILERDEKHADILWNTTVIISDTGK 586
           PTT+FL +LAVK+ +VI+S ILERDE+  D++WNT V+IS TG+
Sbjct: 148 PTTQFLSKLAVKHDIVIISPILERDEEKDDVIWNTAVVISHTGR 191


>Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical
           protein T21C9.3b protein.
          Length = 565

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 298 KAIFDKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 432
           K +FD  ++  D   +  +NI+ F E   MP   FC   +Q W  F
Sbjct: 46  KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90


>Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical
           protein T21C9.3a protein.
          Length = 501

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 298 KAIFDKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 432
           K +FD  ++  D   +  +NI+ F E   MP   FC   +Q W  F
Sbjct: 46  KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90


>Z82265-1|CAB05172.1|  116|Caenorhabditis elegans Hypothetical
           protein F02H6.3a protein.
          Length = 116

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -3

Query: 71  HLSCC*RSLQGFGFRGP--CLLVCY 3
           +L CC RSL+   FRGP  CL+  Y
Sbjct: 92  YLKCCLRSLKKIKFRGPLNCLVQTY 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,442,850
Number of Sequences: 27780
Number of extensions: 307331
Number of successful extensions: 817
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)