Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C12
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical ...    29   6.1  
AF043699-4|AAB97568.1|  610|Caenorhabditis elegans Serotonin/oct...    28   8.1  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = +2

Query: 347 GPCTGLPCCPPAPXPRKNAGXAALXXXGGPCGXGVXXGG 463
           G C G  C PP P P    G       GG CG G   GG
Sbjct: 103 GGCGG-GCAPPPPPPACGGGCGG---GGGGCGGGCGGGG 137


>AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical
           protein W08E12.6 protein.
          Length = 215

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
 Frame = +2

Query: 254 GGRCAXPSFFPTSEDAAPVL--GXCTLGVVRQYGPCTGLPCCPPAPXP 391
           G  C  P F P    +AP++  G           PC G  C PP P P
Sbjct: 120 GPACPPPCFGPACAPSAPIIVNGPPPCFGPACPPPCFGPACAPPPPAP 167


>AF043699-4|AAB97568.1|  610|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 3 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -2

Query: 234 LNLQSMNYEGKSKYNSLFVQCTKLYYMY*KTELGHLTNCPSTDRSVQCPSKNKP 73
           LN  +  Y   + YNS  ++ T       +T LG+ T   ++++S    + N P
Sbjct: 555 LNHPTQKYTNNNSYNSTAIRSTNAVNRVPQTSLGNYTQTQNSEKSSAAVTFNTP 608


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,668,784
Number of Sequences: 27780
Number of extensions: 256277
Number of successful extensions: 521
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)