Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C03
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical...    28   7.4  
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p...    28   9.7  

>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -2

Query: 396 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 262
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical
           protein F45C12.15 protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 408 VTWRKRSSPFKTPA*SGSRTLPGGEFDWGGTPVKE*RRCPKASSARTETS 557
           +T RKR++  +TP  S S +    +  +   PV+  RR  K +++R  TS
Sbjct: 27  LTTRKRTAQQQTPVDSSSSSSDASDESFVACPVEAKRRKKKLTNSRKSTS 76


>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
           protein F26D2.10 protein.
          Length = 1213

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = +1

Query: 109 NGGSNYDSLNTVPIYYLAKPQPRERAW------ENQRGKKTLXE 222
           NG + Y +L    +YY  KP   ER W      +NQ GK TL +
Sbjct: 841 NGRAKYTNLY---LYYFGKPLDYERRWRYSLFLDNQDGKNTLLD 881


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,914,024
Number of Sequences: 27780
Number of extensions: 395623
Number of successful extensions: 1068
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)