Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20166
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    28   0.081
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.3  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 0.081
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 16  YIDVFFDV-MHRSVTTMVIRCIGKCIDVSYISIV 114
           Y D+FF++ + R      +  I  C+ +SY+S++
Sbjct: 222 YPDIFFNITLRRKTLFYTVNLIVPCVSISYLSVL 255


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 284 TKKPAEGEEISKLLFLH 234
           T +P+EGE+IS   F H
Sbjct: 361 TNQPSEGEDISDYKFRH 377


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 534 WTDHHKLVHVTGKLTNLKTF 475
           W +H KL+  T  L  LK+F
Sbjct: 134 WRNHRKLIAPTFHLNVLKSF 153


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 54  HNDGNTMYW 80
           HNDG   YW
Sbjct: 275 HNDGRLRYW 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,849
Number of Sequences: 438
Number of extensions: 3782
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)