Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20129
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    25   0.72 
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    25   0.72 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.1  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.7  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 147 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 52
           +LRR   C   + EAP  PV + + S++P+V+
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 147 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 52
           +LRR   C   + EAP  PV + + S++P+V+
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 213 FPVLDVDISTILHGR 169
           FPVL V I+ +LHG+
Sbjct: 8   FPVLFVIINVLLHGQ 22


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 66  TSKTHTLRPETPGPQ 110
           T   H   PETPGPQ
Sbjct: 462 TPHHHPHPPETPGPQ 476


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 464 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 366
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 464 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 366
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 464 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 366
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 464 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 366
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 464 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 366
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 464 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 366
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 464 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 366
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 464 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 366
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,577
Number of Sequences: 438
Number of extensions: 5133
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)