Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0253.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   8.5  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 254 RSDVNETTVATYVIVQENLPILTHSTRRFL 343
           +SD  + T  T + VQ NLPIL    + F+
Sbjct: 103 KSDNEDITYPTVLEVQLNLPILKDGVQIFI 132


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 254 RSDVNETTVATYVIVQENLPILTHSTRRFL 343
           +SD  + T  T + VQ NLPIL    + F+
Sbjct: 141 KSDNEDITYPTVLEVQLNLPILKDGVQIFI 170


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 141 QNKVPSTLPTSLAWGKHWI 85
           Q   PSTL   L+W   W+
Sbjct: 205 QTFAPSTLVVMLSWFSFWL 223


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +1

Query: 178 QSGAPYEAIPTAHKTHTFYASITTSXVRRERDNRCYIRYRSRE 306
           + G P        + H  Y    T+   R  D+R Y RY+  E
Sbjct: 141 EPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEE 183


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -2

Query: 301 LNDNVCSNG 275
           ++DN+CSNG
Sbjct: 369 IHDNICSNG 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,945
Number of Sequences: 438
Number of extensions: 3683
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)