Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30268.Seq
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.8  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 442 NGQSQGT*AHGSCKDSSLQRAGSV 371
           NG+ +   AHG  ++ +LQ+AG V
Sbjct: 419 NGEFEVEPAHGEDREEALQKAGIV 442


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 349 HIEPIRVIRSQLFEASCLYKIHVLRYLDFA--RFF 447
           H+E  R+IR+  FE++ + +  +   +D A  RFF
Sbjct: 383 HVEVARLIRNYYFESNKIDETTLKHLIDVASDRFF 417


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 349 HIEPIRVIRSQLFEASCLYKIHVLRYLDFA--RFF 447
           H+E  R+IR+  FE++ + +  +   +D A  RFF
Sbjct: 383 HVEVARLIRNYYFESNKIDETTLKHLIDVASDRFF 417


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +1

Query: 148 ECDHRPELSQQASMPPTIAKPCVQYCLMTCRNVKVYSITF 267
           ECDH   L    S P  ++ P +          KV  +TF
Sbjct: 172 ECDHVQFLITNTSGPGVVSNPMIAELETLSVEPKVSPMTF 211


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +1

Query: 148 ECDHRPELSQQASMPPTIAKPCVQYCLMTCRNVKVYSITF 267
           ECDH   L    S P  ++ P +          KV  +TF
Sbjct: 172 ECDHVQFLITNTSGPGVVSNPMIAELETLSVEPKVSPMTF 211


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 335 SFVIFTFAHLLESRLSPRSSVGANVME 255
           +F+I  +A LL +R    + + ANV E
Sbjct: 418 AFIILQYAGLLRNRSEYLNHLRANVAE 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,612
Number of Sequences: 438
Number of extensions: 2516
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)