Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30176.Seq
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   4.6  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   4.6  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   4.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   4.6  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   4.6  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   4.6  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   4.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.0  

>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 510 RIINETNSSIRYSY*EMSIENFRSYYSSLQYWH 412
           +II+  +++ +YS       N+ + Y  LQY++
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 510 RIINETNSSIRYSY*EMSIENFRSYYSSLQYWH 412
           +II+  +++ +YS       N+ + Y  LQY++
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 510 RIINETNSSIRYSY*EMSIENFRSYYSSLQYWH 412
           +II+  +++ +YS       N+ + Y  LQY++
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 510 RIINETNSSIRYSY*EMSIENFRSYYSSLQYWH 412
           +II+  +++ +YS       N+ + Y  LQY++
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 510 RIINETNSSIRYSY*EMSIENFRSYYSSLQYWH 412
           +II+  +++ +YS       N+ + Y  LQY++
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 510 RIINETNSSIRYSY*EMSIENFRSYYSSLQYWH 412
           +II+  +++ +YS       N+ + Y  LQY++
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 510 RIINETNSSIRYSY*EMSIENFRSYYSSLQYWH 412
           +II+  +++ +YS       N+ + Y  LQY++
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 365 PLTTASPPHIPS 330
           P TTA+PP +P+
Sbjct: 448 PATTAAPPQLPT 459


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 438 YYSSLQYWHPVVRYPASSII 379
           YYS L  W P   Y +S  I
Sbjct: 136 YYSGLVVWQPPAVYKSSCSI 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,508
Number of Sequences: 438
Number of extensions: 4972
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)