Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30125.Seq
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.2  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   4.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.2  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   6.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 344 SHIEYPPIHSHQHSAT 297
           SHI   P H H H+AT
Sbjct: 424 SHIHATPHHHHSHAAT 439


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 116 KVSKKPLCLACTFSTSGGE 60
           K +KKPL   C F  + GE
Sbjct: 30  KKNKKPLPTECVFCRNNGE 48


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 151 VFVSTFVILYKFYYKYKTHCSK 216
           VF S +  +  +Y+KYK +  K
Sbjct: 416 VFFSIYKTILDYYHKYKENLPK 437


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 151 VFVSTFVILYKFYYKYKTHCSK 216
           VF S +  +  +Y+KYK +  K
Sbjct: 416 VFFSIYKTILDYYHKYKENLPK 437


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 151 VFVSTFVILYKFYYKYKTHCSK 216
           VF S +  +  +Y+KYK +  K
Sbjct: 42  VFFSIYKTILDYYHKYKENLPK 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,703
Number of Sequences: 438
Number of extensions: 4284
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)