Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    61   8e-12

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 60.9 bits (141), Expect = 8e-12
 Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
 Frame = +1

Query: 103 LYLKNNSISIVKKNAFQNQITLITLDLSDNKIIQI-EQYSLPLKKIQYLLLSGNFIGGVI 279
           L L+NNSI  ++ NAF     L TL+LSDNK+  +  Q    L  +  L LSGN I   I
Sbjct: 364 LDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIAS-I 422

Query: 280 KNNTFSGAKYLRFLNLSNFNITTVDDMAFXDLPVLARLNLSHNQIDXFXPNNFQGME 450
               F     L+ L+LS   +T+V D A  DL +L  L+L  N+I  F   +F+ ++
Sbjct: 423 DPLAFRNCSDLKELDLSGNELTSVPD-ALRDLALLKTLDLGENRISNFYNGSFRNLD 478



 Score = 40.7 bits (91), Expect = 9e-06
 Identities = 32/104 (30%), Positives = 47/104 (45%)
 Frame = +1

Query: 103 LYLKNNSISIVKKNAFQNQITLITLDLSDNKIIQIEQYSLPLKKIQYLLLSGNFIGGVIK 282
           L L  N+I+ +   AF+N   L  LDLS N++  +      L  ++ L L  N I     
Sbjct: 412 LTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFY- 470

Query: 283 NNTFSGAKYLRFLNLSNFNITTVDDMAFXDLPVLARLNLSHNQI 414
           N +F     L  L L   +I  +      DLP L  LNL+ N++
Sbjct: 471 NGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKV 514



 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +1

Query: 103  LYLKNNSISIVKKNAFQNQITLITLDLSDNKIIQIEQYSLP-LKKIQYLLLSGNFIGGVI 279
            LY+  + I  ++   F     L  L L DN+I +++ +    L  ++ L L  N I G I
Sbjct: 823  LYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLI-GFI 881

Query: 280  KNNTFSGAKYLRFLNLSNFNITT 348
             N TF   + L  L LS   + T
Sbjct: 882  GNLTFLPLRSLEILRLSGNRLVT 904



 Score = 36.7 bits (81), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +1

Query: 97  TELYLKNNSISIVKKNAFQNQITLITLDLSDNKIIQIEQYSLPLK-KIQYLLLSGNFIGG 273
           T L L  N I  + +    +   L  L+L+ NK+  +E+Y+     +++ + L GNF+  
Sbjct: 481 TGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSD 540

Query: 274 VIKNNTFSGAKYLRFLNLSNFNITTVD 354
           +  N  F+    L  LNLS  +I   D
Sbjct: 541 I--NGVFTSIASLLLLNLSENHIEWFD 565



 Score = 35.1 bits (77), Expect = 4e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +1

Query: 103 LYLKNNSISIVKKNAFQNQITLITLDLSDNKIIQIEQYSLPLKKI 237
           L++ NN I++V+ N F +++ L  +D+  N I  +E  SL L K+
Sbjct: 622 LFINNNYINLVRPNTFTDKVNLTRVDMYANMIETMELTSLLLTKV 666



 Score = 31.1 bits (67), Expect = 0.007
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
 Frame = +1

Query: 100 ELYLKNNSISIVKKNAFQNQITLITLDLSDNKIIQI-EQYSLPLKKIQYLLLSGNFIGGV 276
           EL+L+ N+I  +  +A      L T + S N +  + E      + ++ + L+ N +  +
Sbjct: 241 ELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDL 300

Query: 277 IKNNTFSGAKYLRFLNLSNFNITT--VDDMAFXDLPVLARLNLSHNQIDXFXPNNFQGM 447
            K   F+  + L  LNL+   + +  VD+  F  L  L  LNLS+N +       F+ +
Sbjct: 301 PKG-IFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDL 358



 Score = 30.3 bits (65), Expect = 0.013
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +1

Query: 172 TLDLSDNKIIQIEQYSLPLKKIQYLLLSGNFIGGVIKNNTFS 297
           TLD S N+I ++   S+P   ++ L ++ N+I  +++ NTF+
Sbjct: 599 TLDASHNRITELSPLSVP-DSVELLFINNNYI-NLVRPNTFT 638



 Score = 26.6 bits (56), Expect = 0.15
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 100  ELYLKNNSISIVKKNAFQNQITLITLDLSDNKIIQIEQYSLPLK-KIQYLLLSGN 261
            ELYL+NN I  +    F    +L  L LS N+++    + + L  ++  L L  N
Sbjct: 870  ELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNARLVELSLGSN 924


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,200
Number of Sequences: 438
Number of extensions: 2137
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)