Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F03f
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   4.1  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    20   9.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   9.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   9.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 191 YNNKNNYLHWINGRSHFL 138
           YN K++YLH I   + F+
Sbjct: 93  YNGKHSYLHTITSPNKFV 110


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 188 NNKNNYLHWINGRSHFLFSSLD*MFTY 108
           N+KN++LH +  R+  +  S D   TY
Sbjct: 125 NDKNSFLHDVTERNKLVRLSGDGSVTY 151


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 352 RDITLRIIIEMSLLHLTI 299
           R  T RI+I  SL H TI
Sbjct: 251 RSSTSRIVISESLKHFTI 268


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 278 ILKNKRKGKSNSITP 234
           I++ KRK K+ ++TP
Sbjct: 463 IIEEKRKNKNKNLTP 477


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +3

Query: 360 CQKIACMFKKKTF 398
           C+K+ C+ +K +F
Sbjct: 74  CEKVGCICRKTSF 86


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 191 YNNKNNYLHWINGRSHFLFSSLD 123
           YN K++Y+H I   +  L  S D
Sbjct: 125 YNGKHSYVHTITVPNKLLRISQD 147


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 8   LGTLCLSVEPGLIM 49
           LG  C+S+ P LIM
Sbjct: 167 LGAACISLPPLLIM 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,694
Number of Sequences: 438
Number of extensions: 2248
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)