Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E08f
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   0.72 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   0.72 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   6.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 0.72
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 238 TVEKLIQNVLKLTLNS*GYECIKIKEAFFENVKYFL-EKNC*SCPILLTSFLS 83
           T+EK   +      N+  Y C+K+   F     Y+L +     C +++ S++S
Sbjct: 210 TLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVS 262


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 0.72
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 238 TVEKLIQNVLKLTLNS*GYECIKIKEAFFENVKYFL-EKNC*SCPILLTSFLS 83
           T+EK   +      N+  Y C+K+   F     Y+L +     C +++ S++S
Sbjct: 210 TLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVS 262


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 337 SPIQMQLFLIDHQPFQH 287
           S ++  L  +DHQP+Q+
Sbjct: 504 SRVRAHLKRLDHQPYQY 520


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 367 NSK*WLWKPCSPIQMQLF 314
           N+  W+W  CS    Q F
Sbjct: 410 NAGMWMWLSCSSFFQQFF 427


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +1

Query: 127 FLENTLHFQKMPPLS*YIHTLNCLMSILKHF 219
           F +  +H   +  +  Y H  +  + +LKHF
Sbjct: 135 FSDKNIHVSFLRTVPPYSHQTDVWVELLKHF 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,288
Number of Sequences: 438
Number of extensions: 1960
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)