Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0069
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              31   0.012
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   4.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 31.1 bits (67), Expect = 0.012
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 252 FRLYDREGNGYITTSTLKEILAA--LDDKLSNADLDGIIAEIDTDGSGTVDFDEF 410
           F  YDR  NG +    L++      L++     +L  +I+  DTDG G ++ +EF
Sbjct: 242 FSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNVNEF 296


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 557 KLKEKN*IRTDFVYLVEMCLLFMYLHHVGHER 652
           K+K K+ +  + +     C LF+ + H  H R
Sbjct: 270 KIKRKHNVFVNNILAASACSLFVVIFHFAHPR 301


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 768 LKKRCNAL*ILALSDYNAKKKNSSLVNYSKNNS 670
           ++K      + +LSDYN K   +S  N  +NN+
Sbjct: 139 IQKNLQCCGVHSLSDYNDKPIPASCCNSPENNT 171


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -3

Query: 741 ILALSDYNAKKKNSSLVNYSKNNSL 667
           +LA+   + ++  S L+N+SKNN++
Sbjct: 491 VLAVVRQSEEEAVSLLINFSKNNTI 515


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -2

Query: 604 YKIDKIGTYLIFFFQFIQPC*YRIRFVLVLK 512
           + ++++G  +  +F F +PC   + F  +LK
Sbjct: 320 HHLNRLGREISTYFTFTRPCGITLTFHEILK 350


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 69  EDLHHSQHNGTAIR*LR 119
           E +HH  HNG   R L+
Sbjct: 20  ESVHHCHHNGVVHRDLK 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,893
Number of Sequences: 438
Number of extensions: 4302
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)