Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30081
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.29 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.29 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.66 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TNLWV   W  + +RW
Sbjct: 77  TNLWVEQSWYDYKLRW 92


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TNLWV   W  + +RW
Sbjct: 77  TNLWVEQSWYDYKLRW 92


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TNLWV   W  + ++W
Sbjct: 73  TNLWVEQSWYDYKLKW 88


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TN W+   WV + ++W
Sbjct: 35  TNAWLKLEWVDYNLQW 50


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TN W+   WV + ++W
Sbjct: 35  TNAWLKLEWVDYNLQW 50


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TN W+   WV + ++W
Sbjct: 35  TNAWLKLEWVDYNLQW 50


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TN W+   WV + ++W
Sbjct: 35  TNAWLKLEWVDYNLQW 50


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TN W+   WV + ++W
Sbjct: 35  TNAWLKLEWVDYNLQW 50


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TN W+   WV + ++W
Sbjct: 35  TNAWLKLEWVDYNLQW 50


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TN W+   WV + ++W
Sbjct: 103 TNAWLKLEWVDYNLQW 118


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TN W+   WV + ++W
Sbjct: 103 TNAWLKLEWVDYNLQW 118


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TN+WV   W  + ++W
Sbjct: 69  TNVWVEQEWNDYKLKW 84


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TN+WV   W  + ++W
Sbjct: 82  TNVWVEQRWNDYKLKW 97


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TN WVT  W    ++W
Sbjct: 54  TNCWVTQIWTDHHLKW 69


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TNLW+   W    +RW
Sbjct: 72  TNLWLKLEWNDVNMRW 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,495
Number of Sequences: 438
Number of extensions: 4278
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)