Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b03r
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    25   0.98 
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    25   0.98 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.98 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.1  

>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 83  FDHSLIDCLLIGFALLRWNVFLFFCGKDVITLFA 184
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 29  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 62


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 83  FDHSLIDCLLIGFALLRWNVFLFFCGKDVITLFA 184
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 45  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 78


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
 Frame = -3

Query: 300 SAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSA 121
           +A+ S PPP F  +  +  + S ++++ R  +   +  +A   M  +P    N  ++S  
Sbjct: 374 TALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP----NMSNMSGM 429

Query: 120 KPIRRQSMRL*SKPLEPD---PTRRCSADTS 37
            P+      + + P  P    P RR  +D S
Sbjct: 430 PPLPNMPGSMPTMPTMPSMAGPIRRRISDKS 460


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 87  SKPLEPDPTRRCSADTSRRPSDSAPANIP 1
           S+P  P P  R  A+    P ++ P  IP
Sbjct: 106 SQPRPPHPRLRREAEPEAEPGNNRPVYIP 134



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 87  SKPLEPDPTRRCSADTSRRPSDSAPANIP 1
           S+P  P P  R  A+    P ++ P  IP
Sbjct: 162 SQPRPPHPRLRREAEPEAEPGNNRPVYIP 190


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 74   SPTRQEGAPRIPQGGLRTPLQPIS 3
            +P+RQ G+     GGL TP   ++
Sbjct: 1922 APSRQTGSGHGGHGGLLTPYDTVA 1945


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -1

Query: 521 LPHSGENPCLIWWPSIQQACTQDPTQ 444
           +P   +NP +  W     AC+  P Q
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQ 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,963
Number of Sequences: 438
Number of extensions: 4384
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)