Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a24r
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 333 MKIISHQNAKLSWNILNLTCTNTQ 404
           M+ IS +NAK+S +  + TC+N+Q
Sbjct: 2   MEEISTENAKVSDSGYSNTCSNSQ 25


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 333 MKIISHQNAKLSWNILNLTCTNTQ 404
           M+ IS +NAK+S +  + TC+N+Q
Sbjct: 2   MEEISTENAKVSDSGYSNTCSNSQ 25


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 145 TKCFFFLFNKIYIHRCVEET*NFKRAETCKI 237
           T+ F  L + +  H C E   NFK+ +  KI
Sbjct: 241 TRVFNTLVDLVPKHACAEYRRNFKKMQEEKI 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,802
Number of Sequences: 438
Number of extensions: 3766
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)