Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a17r
(497 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase doma... 27 0.14
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 24 0.77
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 24 1.0
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 24 1.0
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 23 1.8
AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter... 23 2.3
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 3.1
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 3.1
DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase ... 21 7.1
DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase ... 21 7.1
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 21 9.4
>DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase domain
protein protein.
Length = 448
Score = 26.6 bits (56), Expect = 0.14
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -2
Query: 211 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLRED-LERLKKI 92
KI WFL++ K+I+D Y L +++ +L D L R K+I
Sbjct: 275 KIDKWFLHKMKNIID-YYLVLENTDHTKQLSHDVLLRAKQI 314
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 24.2 bits (50), Expect = 0.77
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +3
Query: 204 GILYCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLI 347
G + +G M+V IF ++ S+ +P+ L A ++ + P++
Sbjct: 63 GFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMSPPMV 110
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.8 bits (49), Expect = 1.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 184 QKDIVDGKYSQLTSSNLDSKLREDLERLKKIRA 86
+ D + QLTSS +S + D +LK IRA
Sbjct: 1781 ESDESESDPDQLTSSRTESSNQLDAGKLKHIRA 1813
Score = 21.4 bits (43), Expect = 5.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 318 LEYLRPTPLIAVIANITLRL 377
L Y+R P + +A TLRL
Sbjct: 519 LPYIRLIPKVTAVAGETLRL 538
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.8 bits (49), Expect = 1.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 184 QKDIVDGKYSQLTSSNLDSKLREDLERLKKIRA 86
+ D + QLTSS +S + D +LK IRA
Sbjct: 1777 ESDESESDPDQLTSSRTESSNQLDAGKLKHIRA 1809
Score = 21.4 bits (43), Expect = 5.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 318 LEYLRPTPLIAVIANITLRL 377
L Y+R P + +A TLRL
Sbjct: 519 LPYIRLIPKVTAVAGETLRL 538
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 23.0 bits (47), Expect = 1.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 204 GILYCLGFDMIVIIFSTSSSVHSPARL 284
G + +G M+V IF ++ S+ +P+ L
Sbjct: 29 GFVSVMGNGMVVYIFLSTKSLRTPSNL 55
>AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter
Am-EAAT protein.
Length = 543
Score = 22.6 bits (46), Expect = 2.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 337 VGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITI 233
+G+R S V K A T +E+EKI T+
Sbjct: 3 LGQRISGAVAVLRGTSEVKEAQTSTSDEIEKITTV 37
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.2 bits (45), Expect = 3.1
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 210 LYCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIANITL 371
+ C+ MI I F+TS ++ R + + T+ L PT ++ A+ L
Sbjct: 540 MLCIPGYMIYIWFTTSGTISEKFRKLIRIEDDVATLRMKLNPTKAASINADFEL 593
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.2 bits (45), Expect = 3.1
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 210 LYCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIANITL 371
+ C+ MI I F+TS ++ R + + T+ L PT ++ A+ L
Sbjct: 593 MLCIPGYMIYIWFTTSGTISEKFRKLIRIEDNVATLRMKLNPTKAASINADFEL 646
>DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase
isoform B protein.
Length = 931
Score = 21.0 bits (42), Expect = 7.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 289 DQCRLF*EQCWS 324
D+C EQCWS
Sbjct: 829 DECWRLMEQCWS 840
>DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase
isoform A protein.
Length = 969
Score = 21.0 bits (42), Expect = 7.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 289 DQCRLF*EQCWS 324
D+C EQCWS
Sbjct: 867 DECWRLMEQCWS 878
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 20.6 bits (41), Expect = 9.4
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -1
Query: 416 STYSSYHEYEHRW 378
+TY+ EY+H W
Sbjct: 153 TTYTPVCEYDHTW 165
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,612
Number of Sequences: 438
Number of extensions: 3253
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -