Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G08
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +2

Query: 350 EWEIVXNGHKES*F*ARNSL---LKILSANL*IERFVS-GSTRMSSLNVIFI 493
           EWEIV   H ES   ++  L     +LS N+ + R  S  ST   +L ++ +
Sbjct: 207 EWEIVHMSHSESTIDSKFGLGFTTDLLSYNILLRRHYSMNSTTYVTLTIVLM 258


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 207 QQVALFYRKPVLLAYTDLISKSFWKK 130
           Q++AL+Y KP   A         WKK
Sbjct: 404 QEMALYYLKPSYDAQEPAWKTHVWKK 429



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 275 ENEPQPIGFNHSRC 316
           E EPQPIG   S+C
Sbjct: 698 EAEPQPIGKALSKC 711


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +3

Query: 333 LXVAMANGKLFXMDIRNPDSEQEIHYSKY 419
           L   + NG L     R  D  QE+H   Y
Sbjct: 51  LRQVLPNGNLVFPPFRAEDYRQEVHAQVY 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,568
Number of Sequences: 438
Number of extensions: 3510
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)