Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E24
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       29   0.051
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   3.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.9  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 0.051
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 430 HKNLFYSFKLVSFYWFLKIIIWHSSTSILQSLR 528
           H+  +  F ++  YWF  ++I ++ TSIL  +R
Sbjct: 200 HEITYSLFGMIMMYWFPLVVIIYTYTSILLEIR 232


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 639 TIYNMSNTENASFNXKYKN 583
           TI+N +N  N ++N  Y N
Sbjct: 322 TIHNNNNYNNNNYNNNYNN 340


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/14 (35%), Positives = 12/14 (85%)
 Frame = +2

Query: 119 VTSLLHHVHAKRQL 160
           +T+++HH+H  +Q+
Sbjct: 337 LTAMMHHLHVAKQM 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,438
Number of Sequences: 438
Number of extensions: 3018
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)