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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20084
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.96 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.96 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.96 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.96 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.96 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.7  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.2  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   3.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.0  

>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 335
           LP DS   L L V +  S  V LN++A+    T   V  +   F
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 335
           LP DS   L L V +  S  V LN++A+    T   V  +   F
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 335
           LP DS   L L V +  S  V LN++A+    T   V  +   F
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 335
           LP DS   L L V +  S  V LN++A+    T   V  +   F
Sbjct: 286 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 329


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 433 QGQDKPESQLEVNRSVGEQQGLLQDLNTERNQYLVLGVGTNWNGDHMAFGV 585
           Q  DK ++   + +   +QQ L+Q L   ++QYL L  G    G + + G+
Sbjct: 165 QTADKKKASAPLQQLALQQQRLIQQLQITQSQYL-LQQGLGLQGHNPSSGL 214


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 185 EEERSHHKCREQTDTKQQDELHGD 256
           +EER   K R+Q++ +    LH D
Sbjct: 181 QEERQRTKERDQSEVESTSSLHSD 204


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 185 EEERSHHKCREQTDTKQQDELHGD 256
           +EER   K R+Q++ +    LH D
Sbjct: 181 QEERQRTKERDQSEVESTSSLHSD 204


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQ 383
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQ 383
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQ 383
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQ 383
           LP DS   L L V +  S  V LN++A+
Sbjct: 286 LPPDSGEKLTLGVTILLSLTVFLNLVAE 313


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 227 TKQQDELHGDAYQLWLQGSKDIVR 298
           TK+Q+ L   A + W++  K IVR
Sbjct: 92  TKKQEMLVRSAIKYWVERHKHIVR 115


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 323 LIFAENAIKLMYKRDGLALTLSNDVQGDDGRPAYGDGKDKTSPRVS 460
           L   E  IK+ ++   +     N  +G    P  GDG  + SP+ S
Sbjct: 307 LCLTERQIKIWFQNRRMKWKKENKSKGT---PGSGDGDTEISPQTS 349


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 90  VPNDILEEQLYNSVVVADYDSAVEK 164
           VP+++  + LYN +VV++  S   K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 475 SVGEQQGLLQDLNTERNQYLVLGVGTNWNGDHMAFGVNSVDS 600
           S G  +  L  L+TE+    +    T W   HM+   +++DS
Sbjct: 181 SHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSESTIDS 222


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 90  VPNDILEEQLYNSVVVADYDSAVEK 164
           VP+++  + LYN +VV++  S   K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 624 LQVPLGSETIDAVDSEGHMVAVPVSADSQYQVLVT 520
           L+ P+G+E+   V S G  +   +  D + Q+L+T
Sbjct: 38  LERPVGNESEPLVLSFGLTLMQIIDVDEKNQLLIT 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,395
Number of Sequences: 438
Number of extensions: 3534
Number of successful extensions: 19
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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