Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0115
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.69 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.5  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -1

Query: 615 VKQSQQQVGSLMNSENVQAREWYLHLLWLVLE 520
           +K  +Q+ GS + ++ +   ++YL + W +LE
Sbjct: 188 LKHMKQEAGSNLVAKGIDLSDFYLSVEWDILE 219


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 625 QKGYWRNGNVTLSFDLRRRXLSNV 696
           Q  +W  GN  LS D     +S+V
Sbjct: 19  QAQHWSRGNTWLSLDNSNMSMSSV 42


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 625 QKGYWRNGNVTLSFDLRRRXLSNV 696
           Q  +W  GN  LS D     +S+V
Sbjct: 19  QAQHWSRGNTWLSLDNSNMSMSSV 42


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 68 PFCIFNQSCYLFLKQ 24
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,988
Number of Sequences: 438
Number of extensions: 4663
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)