Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0071
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -2

Query: 252  TESHFSTQSSKVSSLLREVHGAVHLLAGYWRRLRTIPTKPPVSFGEAF 109
            +E H    S  + S +   +  +   A  WR+ +  P  PP S G+A+
Sbjct: 1323 SEDHRRPLSEHIYSSIDSDYSTLERTA--WRQQQPPPPPPPPSSGQAY 1368


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 587 MLPQQQPANVGKEES 543
           +LP  +PANV KE+S
Sbjct: 768 LLPVIKPANVNKEQS 782


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 159 DANNLPEDAPPHVPPSA 209
           D++  P+ APP  PPS+
Sbjct: 334 DSDTPPKPAPPPPPPSS 350


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 481 RDHRMHHKY*RPMRTPTTQPEDSSFPT 561
           R   MH+   RP   P TQ  +   PT
Sbjct: 389 RKRPMHNVVYRPGENPVTQKREGGPPT 415


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 481 RDHRMHHKY*RPMRTPTTQPEDSSFPT 561
           R   MH+   RP   P TQ  +   PT
Sbjct: 409 RKRPMHNVVYRPGENPVTQKREGGPPT 435


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 481 RDHRMHHKY*RPMRTPTTQPEDSSFPT 561
           R   MH+   RP   P TQ  +   PT
Sbjct: 358 RKRPMHNVVYRPGENPVTQKREGGPPT 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,399
Number of Sequences: 438
Number of extensions: 6870
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)