Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0045
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.6  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
          factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 32 HTQEFRLTTN*SRQKKAKED 91
          H Q + +T   ++QKK KED
Sbjct: 7  HYQHYHITPVFTKQKKVKED 26


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 75  RRPRKIFVEKLKPVFISKHYRFEFLQHKFNLSCKYL 182
           R P+ I     K +  + +Y++ +  + +N +CK L
Sbjct: 77  REPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 75  RRPRKIFVEKLKPVFISKHYRFEFLQHKFNLSCKYL 182
           R P+ I     K +  + +Y++ +  + +N +CK L
Sbjct: 77  REPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 75  RRPRKIFVEKLKPVFISKHYRFEFLQHKFNLSCKYL 182
           R P+ I     K +  + +Y++ +  + +N +CK L
Sbjct: 77  REPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = +3

Query: 75  RRPRKIFVEKLKPVFISKHYRFEFLQHKFNLSCKYL 182
           R P+ I     + +  + +Y++ +  + +N +CK L
Sbjct: 77  REPKIISSLSNRTIHNNNNYKYNYNNNNYNNNCKKL 112


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 274 CLAKLRDLILHNSLTPFHS*CHLS*FSACFIFR 372
           CL    D I+++SL+ F+  C +  F    IF+
Sbjct: 336 CLFYNTDFIIYSSLSSFYIPCIIMVFLYYNIFK 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,475
Number of Sequences: 438
Number of extensions: 3078
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)