Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0103
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   2.6  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +3

Query: 42  HSIQTNCSFIKMSEAKIQEVLITHHYIQ*INIRSDIEEINDLLKQAK 182
           HS  TN S   + EAKI +  I     + I  +SDI E+ D+ K+ K
Sbjct: 429 HSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITEL-DVSKRCK 474


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +3

Query: 42  HSIQTNCSFIKMSEAKIQEVLITHHYIQ*INIRSDIEEINDLLKQAK 182
           HS  TN S   + EAKI +  I     + I  +SDI E+ D+ K+ K
Sbjct: 135 HSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITEL-DVSKRCK 180


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 495 ASNLYFPDCPHAAPLIYLSIYNI 427
           A  LY+P  P  +  I + ++NI
Sbjct: 267 ALQLYYPHVPEYSSSIIMELHNI 289


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 495 ASNLYFPDCPHAAPLIYLSIYNI 427
           A  LY+P  P  +  I + ++NI
Sbjct: 282 ALQLYYPHVPEYSSSIIMELHNI 304


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 426 PVPLVVYEHSLVQQIP*QIYPTGPNHI 346
           P+   +Y  +L+Q  P   YP+  +HI
Sbjct: 423 PMEYRLYNPALIQSQPSPQYPSTSSHI 449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,862
Number of Sequences: 438
Number of extensions: 4018
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)