Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0059
         (377 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.90 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   8.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 0.90
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 245  EQCQTDSLQLLKPYRQQQLLDDLCR*GQRRTIHR--RDSS 132
            +Q  +   Q+ +  R + L+D LCR  +R  + R  +DSS
Sbjct: 1310 QQQASSQQQIPESMRSKALIDQLCRNSRRTPVPRLAQDSS 1349


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 26  PGLQVICSRYEIYLSN 73
           PG +VIC  Y+ +L +
Sbjct: 286 PGCEVICEDYQAFLKH 301


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 356 HNASRSISKFSQQVYLADRSPLR 288
           +  S  I K  +++YL+ R+P++
Sbjct: 12  YRISPQILKNDKRIYLSPRTPIK 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,745
Number of Sequences: 438
Number of extensions: 1713
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)