Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0054
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    26   0.16 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.5  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 174 PGKSVVLSAFSVLPPLAQLALASDGET-HEELLKAIGFPDDDAIRTEFASKSR 329
           P K +   AF   PPL + A+    +T    ++KA+ F D     T+ A K++
Sbjct: 406 PSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTFKDAAGKVTKAAEKAQ 458


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 201 MPRGQRFSLDYFSLLR 154
           +PRG+ FSL Y  LLR
Sbjct: 91  LPRGELFSLYYPQLLR 106


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 201 MPRGQRFSLDYFSLLR 154
           +PRG+ FSL Y  LLR
Sbjct: 91  LPRGELFSLYYPQLLR 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,433
Number of Sequences: 438
Number of extensions: 2202
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)