Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0194
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   5.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   5.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.2  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 767 NHVSNLFGIVTSHLQHVTETI 705
           NH+ N+F I+ S  + +T  I
Sbjct: 57  NHIQNIFKIIKSTNEKITRYI 77


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 767 NHVSNLFGIVTSHLQHVTETI 705
           NH+ N+F I+ S  + +T  I
Sbjct: 40  NHIQNIFKIIKSTNEKITRYI 60


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 396 HFPALLTHPKEKIC 437
           +F A +THP+ ++C
Sbjct: 165 YFTAHVTHPRHRLC 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,696
Number of Sequences: 438
Number of extensions: 5200
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)