Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0112
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.9  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 618 IKKNLAHLNNNSYGKIIFFSAVTTYFPSSE 529
           I+ +L H+N N   K+     +  Y+PS E
Sbjct: 171 IQIDLKHINQNMGDKVEIGIDLREYYPSVE 200


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 76  KPLRYHKDVGLGFKTP 123
           +P+  HK   + F+TP
Sbjct: 274 QPVHVHKQTAIAFRTP 289


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 76  KPLRYHKDVGLGFKTP 123
           +P+  HK   + F+TP
Sbjct: 274 QPVHVHKQTAIAFRTP 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,996
Number of Sequences: 438
Number of extensions: 3624
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)