Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0109
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.95 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.95 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.95 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.7  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 619 HVLMWKCSHMRLPQRVCMLVILITNI 696
           H ++  CS  R    +CML++L+ N+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 619 HVLMWKCSHMRLPQRVCMLVILITNI 696
           H ++  CS  R    +CML++L+ N+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANL 103


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 619 HVLMWKCSHMRLPQRVCMLVILITNI 696
           H ++  CS  R    +CML++L+ N+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANL 103


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 443 TCGSGSHGHHHETARS*SYIPGTGPSTFS 529
           T G   H HHH+T +S  ++    P T S
Sbjct: 346 TMGPPHHHHHHQT-QSLQHLHYRQPPTLS 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,495
Number of Sequences: 438
Number of extensions: 4622
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)