Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120078.Seq
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.3  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   1.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   1.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   1.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   1.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   1.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   1.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   1.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   1.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.3  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 254 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQTPQT 361
           +DEAE    S+  G    + QS I +VAR+ +T  T
Sbjct: 272 SDEAEPSSTSKKSGIVRSHQQSCINRVARETKTAGT 307


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 248 SLTDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 349
           S ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 248 SLTDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 349
           S ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 248 SLTDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 349
           S ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 248 SLTDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 349
           S ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 248 SLTDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 349
           S ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 248 SLTDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 349
           S ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 248 SLTDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 349
           S ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 248 SLTDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 349
           S ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 299 RHQYCQSWILQVARQRQTPQTTCHSKS 379
           RH   ++W+    R + TPQ+   S++
Sbjct: 241 RHLERKAWVASFGRPKMTPQSLLPSQT 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,019
Number of Sequences: 438
Number of extensions: 2487
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)